View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1402_low_7 (Length: 534)

Name: NF1402_low_7
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1402_low_7
NF1402_low_7
[»] chr6 (18 HSPs)
chr6 (30-373)||(33645003-33645346)
chr6 (30-183)||(33387565-33387717)
chr6 (31-183)||(33285002-33285153)
chr6 (30-147)||(9166189-9166306)
chr6 (75-216)||(33261975-33262117)
chr6 (73-179)||(33407777-33407882)
chr6 (82-178)||(28870678-28870772)
chr6 (30-154)||(33303917-33304041)
chr6 (66-183)||(33271233-33271349)
chr6 (82-183)||(33409377-33409477)
chr6 (73-154)||(33396851-33396932)
chr6 (66-183)||(33398465-33398581)
chr6 (82-161)||(33358345-33358423)
chr6 (88-244)||(33056908-33057062)
chr6 (73-154)||(33281153-33281234)
chr6 (77-133)||(31563325-31563381)
chr6 (330-372)||(33056858-33056900)
chr6 (462-516)||(33648495-33648549)
[»] chr2 (2 HSPs)
chr2 (40-160)||(17441362-17441482)
chr2 (105-179)||(17446954-17447027)
[»] scaffold1408 (1 HSPs)
scaffold1408 (73-216)||(2-146)
[»] scaffold0428 (2 HSPs)
scaffold0428 (73-216)||(5748-5892)
scaffold0428 (73-154)||(13018-13099)
[»] chr4 (5 HSPs)
chr4 (84-161)||(31479558-31479635)
chr4 (66-161)||(31473099-31473195)
chr4 (82-149)||(31525791-31525858)
chr4 (105-171)||(31499587-31499652)
chr4 (84-141)||(31485298-31485355)


Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 30 - 373
Target Start/End: Original strand, 33645003 - 33645346
Alignment:
Q  30 gaatttggaaaaatccattttgacatttttgagggggaaggtttgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaat 129  Q
    |||||||||| |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33645003 gaatttggaagaatctattttgacatttttgagagggaaggtctgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaat 33645102  T
Q  130 agttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaaggtttgggtatgaagatgaggcagaaccacaaccgcagccataacca 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33645103 agttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaaggtttgggtatgaagatgaggcagaaccacaaccgcagccataacca 33645202  T
Q  230 cttcacagataagaaggtaatgaagagtctcaacaaattgaacaagaatcatctatctgttgccacctactcattggttgtcatcaacctgcaaaataca 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33645203 cttcacagataagaaggtaatgaagagtctcaacaaattgaacaagaatcatctatctgttgccacctactcattgtttgtcatcaacctgcaaaataca 33645302  T
Q  330 aacatattttcatgggtatatgttctgcttcataccatgaagtg 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33645303 aacatattttcatgggtatatgttctgcttcataccatgaagtg 33645346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 30 - 183
Target Start/End: Complemental strand, 33387717 - 33387565
Alignment:
Q  30 gaatttggaaaaatccattttgacatttttgagggggaaggtttgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaat 129  Q
    ||||||||||| |||  ||||||||||||| ||||| ||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||     
T  33387717 gaatttggaaatatctgttttgacatttttaaggggcaagctttgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaag 33387618  T
Q  130 agttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaag 183  Q
    | ||||||||| ||||||| |||||| ||||| ||||| |||||||||||||||    
T  33387617 aattcaacttaccaatgataaatcacgaaaat-tccttggctccgaagtgtaag 33387565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 31 - 183
Target Start/End: Complemental strand, 33285153 - 33285002
Alignment:
Q  31 aatttggaaaaatccattttgacatttttgagggggaaggtttgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaata 130  Q
    |||||| |||||||  || | ||||| ||| ||| |||| |||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||| |    
T  33285153 aatttgaaaaaatcagttgttacattgttgggggtgaagatttgggtatggaggtgaacagttgtggatatcgttgggtatgtaaacaagacctacaaga 33285054  T
Q  131 gttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaag 183  Q
    |||||| |||||||||||||||||| ||||||||||| |||||||||||||||    
T  33285053 gttcaatttaacaatgatgaatcac-aaaatatccttggctccgaagtgtaag 33285002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 9166306 - 9166189
Alignment:
Q  30 gaatttggaaaaatccattttgacatttttgagggggaaggtttgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaat 129  Q
    ||||||||||||||||||||||||||| ||  ||| |||||||||| |||||||||||||| |||||| || |||||||||||||||||||||||||||     
T  9166306 gaatttggaaaaatccattttgacattattcggggtgaaggtttggatatgaaggtgaagacttgtggataccgttgggtatgtaaacaagacctacaag 9166207  T
Q  130 agttcaacttaacaatga 147  Q
    ||||||||||||| ||||    
T  9166206 agttcaacttaacgatga 9166189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 75 - 216
Target Start/End: Complemental strand, 33262117 - 33261975
Alignment:
Q  75 ggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccg 174  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||  |||| |||||| ||| ||    
T  33262117 ggtatggaggtgaagagttgcgggtatcattgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaatcatgaaaa-atccttggcttcg 33262019  T
Q  175 aagtgtaaggtttgggta--tgaagatgaggcagaaccacaacc 216  Q
    || |||||| ||| || |  |||||||||| || ||||||||||    
T  33262018 aaatgtaagattttggcaattgaagatgagacacaaccacaacc 33261975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 33407882 - 33407777
Alignment:
Q  73 tgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctc 172  Q
    |||||| |||||||||||| || |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||    
T  33407882 tgggtacgaaggtgaagagctgcgggtatagttgggtatgtaaacaagacctacaaaagttcaacttaacaatgatgaatcacgaaaat-tccttggctc 33407784  T
Q  173 cgaagtg 179  Q
     ||||||    
T  33407783 agaagtg 33407777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 28870678 - 28870772
Alignment:
Q  82 aggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagt 178  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| |||| |||||    
T  28870678 aggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaa-cacaaaaat-tccttggctcagaagt 28870772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 33304041 - 33303917
Alignment:
Q  30 gaatttggaaaaatccattttgacatttttgagggggaaggtttgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaat 129  Q
    ||||||| ||||||||||||| | ||||||||||| |||| |||  || || ||||||||||||| |||||||| |||||||||||| ||||||| |||     
T  33304041 gaatttgaaaaaatccattttaatatttttgagggtgaagattttagtttggaggtgaagagttgcgggtatcggtgggtatgtaaagaagacctgcaag 33303942  T
Q  130 agttcaacttaacaatgatgaatca 154  Q
    | |||||||||||||||||||||||    
T  33303941 aattcaacttaacaatgatgaatca 33303917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 66 - 183
Target Start/End: Complemental strand, 33271349 - 33271233
Alignment:
Q  66 gaaggtttgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatcc 165  Q
    ||||| ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| |||||||  |||||||| |||||||| ||||| |||    
T  33271349 gaaggcttgggtatggaggtgaagagttgcgggtatcgttggatatgtaaacaagacctacaagagttcaatataacaatgctgaatcacgaaaat-tcc 33271251  T
Q  166 ttagctccgaagtgtaag 183  Q
    || ||||| || ||||||    
T  33271250 ttggctccaaaatgtaag 33271233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 33409477 - 33409377
Alignment:
Q  82 aggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgta 181  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||  ||||| ||||| |||| ||||||||    
T  33409477 aggtgaaaagttgcgggtatcgttgggtatgtaaacaagacctacaaaagttcaacttcacaatgatgaatcatgaaaat-tccttggctcagaagtgta 33409379  T
Q  182 ag 183  Q
    ||    
T  33409378 ag 33409377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 33396932 - 33396851
Alignment:
Q  73 tgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatca 154  Q
    |||||||| |||||||||| ||  ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33396932 tgggtatggaggtgaagagctgcaggtatagttgggtatgtaaacaagacctacaaaagttcaacttaacaatgatgaatca 33396851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 66 - 183
Target Start/End: Complemental strand, 33398581 - 33398465
Alignment:
Q  66 gaaggtttgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatcc 165  Q
    |||||||||||| |  ||||||||||||| ||||||||||||||||||||||||||||||| | |||| ||||| ||||||||||||||  ||||| |||    
T  33398581 gaaggtttgggttttgaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacgaaagttgaacttcacaatgatgaatcatgaaaat-tcc 33398483  T
Q  166 ttagctccgaagtgtaag 183  Q
    || ||||  |||||||||    
T  33398482 tttgctcaaaagtgtaag 33398465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 33358423 - 33358345
Alignment:
Q  82 aggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaat 161  Q
    ||||||||||||||| |||||||||||| | |||||||||||||||| |||||||||| ||||||||||||||| |||||    
T  33358423 aggtgaagagttgtgagtatcgttgggttt-taaacaagacctacaagagttcaacttcacaatgatgaatcacgaaaat 33358345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 244
Target Start/End: Complemental strand, 33057062 - 33056908
Alignment:
Q  88 agagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaaggttt 187  Q
    ||||||| || |||||||||||||||||||||||  ||||| | ||||| ||||   | ||||||||||||||| |||||| |||| ||||| ||  |||    
T  33057062 agagttgcggttatcgttgggtatgtaaacaagatatacaagaattcaatttaa---tcatgaatcacaaaaat-tccttaactccaaagtgcaaaattt 33056967  T
Q  188 gggta--tgaagatgaggcagaaccacaaccgcagccataaccacttcacagataagaa 244  Q
     |  |  |||||||||| || ||||| ||||||| ||||||| ||||||||||||||||    
T  33056966 tgacaattgaagatgagacacaaccagaaccgcaaccataactacttcacagataagaa 33056908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 33281234 - 33281153
Alignment:
Q  73 tgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatca 154  Q
    |||||| | ||||||||||||| | | |||||||  |||||||||||||||||||| ||||||  |||||||| ||||||||    
T  33281234 tgggtacggaggtgaagagttgcgtgcatcgttgaatatgtaaacaagacctacaagagttcagtttaacaataatgaatca 33281153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 31563325 - 31563381
Alignment:
Q  77 tatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagtt 133  Q
    ||||| |||||||||||| || |||||||||||||||||||| ||||||||| ||||    
T  31563325 tatgagggtgaagagttgcggatatcgttgggtatgtaaacatgacctacaagagtt 31563381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 372
Target Start/End: Complemental strand, 33056900 - 33056858
Alignment:
Q  330 aacatattttcatgggtatatgttctgcttcataccatgaagt 372  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  33056900 aacatattttcatgggtgtatgttctgtttcataccatgaagt 33056858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 516
Target Start/End: Original strand, 33648495 - 33648549
Alignment:
Q  462 gtatgatttggtcatttactaaaaagtgacatttccataattcctcaaattccta 516  Q
    ||||||||||||||| ||| ||||||||||||||||| | ||||||| |||||||    
T  33648495 gtatgatttggtcatgtaccaaaaagtgacatttccacacttcctcagattccta 33648549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 40 - 160
Target Start/End: Original strand, 17441362 - 17441482
Alignment:
Q  40 aaatccattttgacatttttgagggggaaggtttgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaactt 139  Q
    |||||| |||||| |||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  17441362 aaatccgttttgaaatttttgaggggcaagctttgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagagttcaactt 17441461  T
Q  140 aacaatgatgaatcacaaaaa 160  Q
    |||||||||||||||| ||||    
T  17441462 aacaatgatgaatcacgaaaa 17441482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 17446954 - 17447027
Alignment:
Q  105 tgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtg 179  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| ||||| |||| ||||||    
T  17446954 tgggtatgtaaacaagacctacaagagttcaacttaacaatgttgaataacgaaaat-tccttggctcagaagtg 17447027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 146 - 2
Alignment:
Q  73 tgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctc 172  Q
    |||||||| | |||||| |||| |||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||  |||| |||||| |||     
T  146 tgggtatggatgtgaagtgttgcgggtatcgttgggtatgtaaacaaaacttacaagagttcaacttaacaatgatgaatcatgaaaa-atccttggctt 48  T
Q  173 cgaagtgtaaggtttgggta--tgaagatgaggcagaaccacaacc 216  Q
    |||| |||||| ||| || |  |||||||||| || ||||||||||    
T  47 cgaaatgtaagattttggcaattgaagatgagacacaaccacaacc 2  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 5892 - 5748
Alignment:
Q  73 tgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctc 172  Q
    |||||||| | |||||| |||| |||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||  |||| |||||| |||     
T  5892 tgggtatggatgtgaagtgttgcgggtatcgttgggtatgtaaacaaaacttacaagagttcaacttaacaatgatgaatcatgaaaa-atccttggctt 5794  T
Q  173 cgaagtgtaaggtttgggta--tgaagatgaggcagaaccacaacc 216  Q
    |||| |||||| ||| || |  |||||||||| || ||||||||||    
T  5793 cgaaatgtaagattttggcaattgaagatgagacacaaccacaacc 5748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 13018 - 13099
Alignment:
Q  73 tgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatca 154  Q
    |||||| | ||||||||||||| | | |||||||  |||||||||||||||||||| ||||||  |||||||| ||||||||    
T  13018 tgggtacggaggtgaagagttgcgtgcatcgttgaatatgtaaacaagacctacaagagttcagtttaacaataatgaatca 13099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 31479558 - 31479635
Alignment:
Q  84 gtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaat 161  Q
    ||||||| ||||||||| |||||||| | |||||| || |||||| | ||||||||||||| ||||||||||| ||||    
T  31479558 gtgaagaattgtgggtaccgttgggtttataaacaggatctacaagaattcaacttaacaaagatgaatcacagaaat 31479635  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 161
Target Start/End: Original strand, 31473099 - 31473195
Alignment:
Q  66 gaaggtttgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaa-cttaacaatgatgaatcacaaaaat 161  Q
    |||| |||||||||  ||||||||| ||||||||| | |||||||| | || | || |||||| ||| ||| |||||||| ||||||||||||||||    
T  31473099 gaagatttgggtatagaggtgaagaattgtgggtaccattgggtatatgaagaggatctacaagagtccaaacttaacaaagatgaatcacaaaaat 31473195  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 31525858 - 31525791
Alignment:
Q  82 aggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatg 149  Q
    ||||||||| |||||| ||||||||||||| |||||| || |||||| |  ||||||| |||||||||    
T  31525858 aggtgaagaattgtggttatcgttgggtatataaacatgatctacaacatctcaactttacaatgatg 31525791  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 31499587 - 31499652
Alignment:
Q  105 tgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagct 171  Q
    ||||||| ||| || || |||||| |||| |||||||||||||||||||||| ||||| ||||||||    
T  31499587 tgggtatataagcatgatctacaagagttgaacttaacaatgatgaatcacagaaata-ccttagct 31499652  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 31485298 - 31485355
Alignment:
Q  84 gtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaa 141  Q
    ||||||||||| |||||||||||||||| ||| || || || ||| ||||||||||||    
T  31485298 gtgaagagttgcgggtatcgttgggtatttaagcaggatctgcaagagttcaacttaa 31485355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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