View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1402_low_8 (Length: 515)
Name: NF1402_low_8
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1402_low_8 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 10 - 473
Target Start/End: Original strand, 41519 - 41984
Alignment:
| Q |
10 |
gcataggccaaccaaaaccacaaaactgatagaaaaaacagcggcagtaatgctgcagaaaaactaacaca--gccaataaaccaaaaaccaataactga |
107 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
41519 |
gcataggccaaccaaaaccacgaaactgatagaaaaaacagcggcagtaatgctgcagaaaaactaacagaaagccaataaaccaaaaaccaataactga |
41618 |
T |
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| Q |
108 |
caagcccaaaacctcatagcagcaaccaaaacagtcctctccacaaggcaccagccatcacctcctattcaagcattctctcggattccaacaccattgc |
207 |
Q |
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| T |
41619 |
caggcccaaaacctcatagcagcaaccaaaacagtcctctccacaaggcaccagccatcacctcctattcaagcattctctcggattccaacaccattgc |
41718 |
T |
|
| Q |
208 |
aatatacctccattatcttgtccacatatcttagcagctgcagcgagaaccctgcataaaattgctcagattattaaaggtgtgaagtaatgtaaaatga |
307 |
Q |
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| T |
41719 |
aatatacctccattatcttgtccacatatcttagcagctgcagcgagaaccctgcataaaattgctcagattattaaaggtgtgaagtaatgtaaaatga |
41818 |
T |
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| Q |
308 |
agtagaatcatatgcatatgcattgttcataaataacattgtaaatttgtcttccaaattgaaagacattcaacggtattcagttttgtatccggtgatg |
407 |
Q |
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| T |
41819 |
agtagaatcatatgcatatgcattgttcataaataacattgtaaatttgtcttccaaattgaaagacattcaacggtattcagttttgtatccggtgatg |
41918 |
T |
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| Q |
408 |
tgtaccnnnnnnnccaattcattgcgacgtcatcttttcatgatgtatcgaacagcatgattggct |
473 |
Q |
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| T |
41919 |
tgtacctttttttccaattcattgcgacgtcatcttttcatgatgtatcgaacagcatgattggct |
41984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 473
Target Start/End: Original strand, 27245814 - 27246265
Alignment:
| Q |
14 |
aggccaaccaaaaccacaaaactgatagaaaaaacagcggcagtaatgctgcagaaaaactaacaca--gccaataaaccaaaaaccaataactgacaag |
111 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | |
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| T |
27245814 |
aggccaaccaaaaccgcaaaactgatagaaaaaacagcagcagtaatgctgcagaaaaactaacagaaagccaataaaccaaaaaccaataactgacagg |
27245913 |
T |
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| Q |
112 |
cccaaaacctcatagcagcaaccaaaacagtcctctccacaaggcaccagccatcacctcctattcaagcattctctcggattccaacaccattgcaata |
211 |
Q |
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| T |
27245914 |
cccaaaaactcatagcagcaaccaaaacagtcctctccacaaggcaccagccatcacctcctattcaagcattctctcggattccaacaccattgcaata |
27246013 |
T |
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| Q |
212 |
tacctccattatcttgtccacatatcttagcagctgcagcgagaaccctgcataaaattgctcagattattaaaggtgtgaagtaatgtaaaatgaagta |
311 |
Q |
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| T |
27246014 |
tacctccattatcttgtccagatatcttaacagat---------atcttg-tccagatatctcagattattaaaggtgtgaagtaatgtaaaatgaagta |
27246103 |
T |
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| Q |
312 |
gaatcatatgcatatgcattgttcataaataacattgtaaatttgtcttccaaattgaaagacattcaacggtattcagttttgtatccggtgatgtgta |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27246104 |
gaatcatatgcatatgcattgttcataaataacattgtaaatttgtcttcctaattgcaagacattcaacggtattcggttttgtatccggtgatgtgta |
27246203 |
T |
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| Q |
412 |
ccnnnnnnnccaattcattgcgacgtcatcttttcatgatgtatcgaacagcatgattggct |
473 |
Q |
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|| |||||||||||||| |||| |||| |||||||||||||||||||||||||||| |
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| T |
27246204 |
cctttttttccaattcattgcgatgtcacctttccatgatgtatcgaacagcatgattggct |
27246265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 200 - 473
Target Start/End: Original strand, 40255979 - 40256238
Alignment:
| Q |
200 |
accattgcaatatacctccattatcttgtccacatatcttagcagctgcagcgagaaccctgcataaaattgctcagattattaaaggtgtgaagtaatg |
299 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
40255979 |
accattgcaatatacctccattatcttgtccagatatcttagcagctgcagcgagaaccctgcataaaattgttcagattattaaaggtgtgaggtaatg |
40256078 |
T |
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| Q |
300 |
taaaatgaagtagaatcatatgcatatgcattgttcataaataacattgtaaatttgtcttccaaattgaaagacattcaacggtattcagttttgtatc |
399 |
Q |
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| T |
40256079 |
taaaatggagtggaatcatatgcataggcattgttcataaataaca-------------tttcatatgcataggcattcaactgtattcagttttgtatc |
40256165 |
T |
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| Q |
400 |
cggtgatgtgtaccnnnnnnnccaattcattgcgacgtcatcttttcatgatgtatcgaacagcatgattggct |
473 |
Q |
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| T |
40256166 |
cggtgatgtgtacc-ttttttccaattcgttgcgacgtcgtctttccaagatgtatcgaacagcatgattggct |
40256238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 52489965 - 52489928
Alignment:
| Q |
166 |
cacctcctattcaagcattctctcggattccaacacca |
203 |
Q |
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| T |
52489965 |
cacctcctattcaagcattctcttgggttccaacacca |
52489928 |
T |
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