View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14030_high_6 (Length: 204)
Name: NF14030_high_6
Description: NF14030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14030_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 49171239 - 49171361
Alignment:
| Q |
13 |
agcagagagtaggaaatgttctcagtctcttcctaattgtgtgttatccctaagaaaattattataggtagatacatatacaaataaccgtccttcttga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49171239 |
agcagagagtaggaaatgttctcagtctcttcctaattgtgtgttatccctaagaaaattattataggtagatacatatacaaataaccgtccttcttga |
49171338 |
T |
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| Q |
113 |
acaaaatcagaataataaagaaa |
135 |
Q |
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| T |
49171339 |
acaaaatcagaataataaagaaa |
49171361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 21492315 - 21492460
Alignment:
| Q |
13 |
agcagagagtaggaaatgttctcagtctcttcctaattgtgtgttatccctaagaaaattattataggtagatacatatacaaataaccgtccttcttga |
112 |
Q |
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| T |
21492315 |
agcagatagtaggaaacgttattggtctcttcctaattgtatgttatccctaggaaaattattatagctagatatatg----aaaaaccgcccctcttga |
21492410 |
T |
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| Q |
113 |
acaaaa-tcagaataataaagaaatgaaatctaggtttattttaattgag |
161 |
Q |
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|||||| |||||| |||||||||| |||| ||| |||||||||||||||| |
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| T |
21492411 |
acaaaaatcagaaaaataaagaaaagaaaactaagtttattttaattgag |
21492460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 49171545 - 49171587
Alignment:
| Q |
142 |
ctaggtttattttaattgagtcgatcactcgtagcataactat |
184 |
Q |
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| T |
49171545 |
ctaggtttattttaattgagtcgatcactcgtagcataactat |
49171587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 45232677 - 45232599
Alignment:
| Q |
81 |
tagatacatatacaaataaccgtccttcttgaacaaaatcag-aataataaagaaatgaaatctaggtttattttaatt |
158 |
Q |
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| T |
45232677 |
tagatacgtatatatataaccgtccctcttgaacaaaatcagcaaaaataaagaaaagaaaactatgtttgttttaatt |
45232599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 8420876 - 8420733
Alignment:
| Q |
13 |
agcagagagtaggaaatgttctcagtctcttcctaattgtgtgttatccctaagaaaattattataggtagatacatatacaaataaccgtccttcttga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
8420876 |
agcagagagtaggaaatgttctcagtctcttcctaattgtgtgttatc-------aaattattataggtagatacatatacaaataaccgtcccttttga |
8420784 |
T |
|
| Q |
113 |
acaaaatcagaataataaagaaatgaaatctaggtttattttaattgagtc |
163 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8420783 |
acaaaatcagaataataaagaaatgaaaactaggtttattttaattgagtc |
8420733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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