View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14030_low_1 (Length: 500)

Name: NF14030_low_1
Description: NF14030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14030_low_1
NF14030_low_1
[»] chr7 (6 HSPs)
chr7 (104-488)||(42029828-42030212)
chr7 (22-74)||(42030237-42030289)
chr7 (373-446)||(10325121-10325194)
chr7 (269-342)||(712131-712204)
chr7 (399-439)||(717501-717541)
chr7 (401-453)||(40901853-40901905)
[»] chr1 (3 HSPs)
chr1 (351-453)||(51080720-51080822)
chr1 (401-453)||(2536530-2536582)
chr1 (401-453)||(11351645-11351697)
[»] chr2 (2 HSPs)
chr2 (351-453)||(40287065-40287167)
chr2 (401-453)||(29894369-29894421)
[»] chr3 (3 HSPs)
chr3 (390-446)||(38998907-38998963)
chr3 (399-446)||(27265807-27265854)
chr3 (401-453)||(36684916-36684968)
[»] chr6 (3 HSPs)
chr6 (399-446)||(13757556-13757603)
chr6 (399-446)||(19047096-19047143)
chr6 (401-453)||(942704-942756)
[»] chr5 (2 HSPs)
chr5 (399-453)||(14856970-14857024)
chr5 (351-435)||(32163040-32163124)
[»] chr8 (2 HSPs)
chr8 (398-443)||(14541224-14541269)
chr8 (350-442)||(11911423-11911515)
[»] chr4 (2 HSPs)
chr4 (399-442)||(2087389-2087432)
chr4 (401-453)||(1394136-1394188)
[»] scaffold0041 (1 HSPs)
scaffold0041 (401-453)||(48113-48165)


Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 104 - 488
Target Start/End: Complemental strand, 42030212 - 42029828
Alignment:
Q  104 ttgcattctggtggacaataggtatgtatgcattgtttgtcatgagaaaagccagcaatcggacgttataagtcattttctttttcacttaacatagtag 203  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42030212 ttgcattctggtggacaataggtatgtatgcattggttgtcatgagaaaagccagcaatcggacgttataagtcattttctttttcacttaacatagtag 42030113  T
Q  204 gaattgagatacttggttttctcctctgtgtatgtgatgatgaaataacggaagcatttggtttgcatacgactttgaaatgaacattagaccttcaact 303  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42030112 gaattgagatacttggttttctcctctatgtatgtgatgatgaaataacggaagcatttggtttgcatacgactttgaaatgaacattagaccttcaact 42030013  T
Q  304 ttataatttggattttgctctcgactttaagaatgttgtagactcatttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaac 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  42030012 ttataatttggattttgctctcgactttaagaatgttgtagactcatttggttgtattatttctgcatatagacagatgttccataatagtttcaaaaac 42029913  T
Q  404 tctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaattgatacagctagtcccatataattttttatgatgat 488  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | |||||| ||||||| ||| ||||||||    
T  42029912 tctcatgttgaatttaatatgaggcaaattaatggggtcgctcgtgaattgatacggttagtcctatataatgtttgatgatgat 42029828  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 42030289 - 42030237
Alignment:
Q  22 ttaagtggcgtgagatcaatttttatgtactgtgtaatttattttagaaccta 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42030289 ttaagtggcgtgagatcaatttttatgtactgtgtaatttattttagacccta 42030237  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 446
Target Start/End: Complemental strand, 10325194 - 10325121
Alignment:
Q  373 tagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 446  Q
    ||||||| |||| |||||| |||| || ||||||||||| |||||||||| ||||||||| |||| ||||||||    
T  10325194 tagacaattgttacttaattgtttaaacaactctcatgtcgagtttaataggaggcaaacgaatgaggtcgctc 10325121  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 712131 - 712204
Alignment:
Q  269 catacgactttgaaatgaacattagaccttcaactttataatttggattttgctctcgactttaagaatgttgt 342  Q
    |||||||||||| |||| |||| | |||||||| || ||||| | ||||||||||| |||| |||||| |||||    
T  712131 catacgactttggaatggacatcataccttcaatttgataatgtagattttgctctagactctaagaaggttgt 712204  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 717501 - 717541
Alignment:
Q  399 aaaactctcatgttgagtttaatatgaggcaaactaatggg 439  Q
    |||||||||||||||||||||||| ||| ||| ||||||||    
T  717501 aaaactctcatgttgagtttaataggagacaagctaatggg 717541  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 453
Target Start/End: Complemental strand, 40901905 - 40901853
Alignment:
Q  401 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 453  Q
    ||||||||||| ||||| |||| |||||||||||||  |||||||| ||||||    
T  40901905 aactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaatt 40901853  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 453
Target Start/End: Complemental strand, 51080822 - 51080720
Alignment:
Q  351 ttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtga 450  Q
    |||||||||||||| |||||| ||||||  |||| |   |||||||  ||||||||||||| |||||||||| ||||||| ||||||||||||||| |||    
T  51080822 ttggttgtattattactgcatgtagacagttgtttcaggatagttttcaaaactctcatgtcgagtttaataggaggcaatctaatggggtcgctcatga 51080723  T
Q  451 att 453  Q
    |||    
T  51080722 att 51080720  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 453
Target Start/End: Complemental strand, 2536582 - 2536530
Alignment:
Q  401 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 453  Q
    ||||||||||| ||||| |||| ||||||| | ||||||||||||| ||||||    
T  2536582 aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaatt 2536530  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 453
Target Start/End: Complemental strand, 11351697 - 11351645
Alignment:
Q  401 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 453  Q
    ||||||||||| ||||| |||| ||||||| | ||||||||||||| ||||||    
T  11351697 aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaatt 11351645  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 453
Target Start/End: Complemental strand, 40287167 - 40287065
Alignment:
Q  351 ttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtga 450  Q
    |||||||||||||| |||||| ||||||  |||| |   |||||||  |||||||||||||  ||||||||||||||||| ||||||||||| ||| |||    
T  40287167 ttggttgtattattactgcatgtagacagttgtttcaggatagttttcaaaactctcatgtcaagtttaatatgaggcaagctaatggggtcactcatga 40287068  T
Q  451 att 453  Q
    |||    
T  40287067 att 40287065  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 453
Target Start/End: Complemental strand, 29894421 - 29894369
Alignment:
Q  401 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 453  Q
    ||||||||||| ||||| |||| ||||||| | ||||||||||||| ||||||    
T  29894421 aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaatt 29894369  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 38998907 - 38998963
Alignment:
Q  390 atagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 446  Q
    |||||||  ||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  38998907 atagttttcaaaactctcatgtcgagtttaataggaggcaagctaatggggtcgctc 38998963  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 446
Target Start/End: Original strand, 27265807 - 27265854
Alignment:
Q  399 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 446  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  27265807 aaaactctcatgttgagtttaataagagacaaactaatgaggtcgctc 27265854  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 453
Target Start/End: Original strand, 36684916 - 36684968
Alignment:
Q  401 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 453  Q
    ||||||||||| ||||| |||| ||||||| ||||||||||||||| ||||||    
T  36684916 aactctcatgtcgagttcaataggaggcaagctaatggggtcgctcatgaatt 36684968  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 446
Target Start/End: Complemental strand, 13757603 - 13757556
Alignment:
Q  399 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 446  Q
    |||||||||||||||||||||||| || ||||||||||| ||||||||    
T  13757603 aaaactctcatgttgagtttaataagaagcaaactaatgaggtcgctc 13757556  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 446
Target Start/End: Original strand, 19047096 - 19047143
Alignment:
Q  399 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 446  Q
    ||||||||||||| |||||||||| ||||||| |||||| ||||||||    
T  19047096 aaaactctcatgtcgagtttaataggaggcaagctaatgtggtcgctc 19047143  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 453
Target Start/End: Original strand, 942704 - 942756
Alignment:
Q  401 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 453  Q
    |||||| |||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  942704 aactctaatgtcgagttcaataggaggcaagccaatggggtcgctcgtgaatt 942756  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 453
Target Start/End: Complemental strand, 14857024 - 14856970
Alignment:
Q  399 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 453  Q
    ||||||||||||| |||||||||||||||||||| |||| | |||||| ||||||    
T  14857024 aaaactctcatgtcgagtttaatatgaggcaaacaaatgtgatcgctcatgaatt 14856970  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 435
Target Start/End: Original strand, 32163040 - 32163124
Alignment:
Q  351 ttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaa 435  Q
    |||||||||||||| |||| | ||||||  |||| |   |||||||  ||||||||||| | |||||||||| ||||||||||||    
T  32163040 ttggttgtattattactgcctgtagacagttgtttcaggatagttttcaaaactctcatatcgagtttaataggaggcaaactaa 32163124  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 443
Target Start/End: Original strand, 14541224 - 14541269
Alignment:
Q  398 aaaaactctcatgttgagtttaatatgaggcaaactaatggggtcg 443  Q
    |||||||||| | ||||||||||||||||||||||||||| |||||    
T  14541224 aaaaactctcgtattgagtttaatatgaggcaaactaatgtggtcg 14541269  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 442
Target Start/End: Complemental strand, 11911515 - 11911423
Alignment:
Q  350 tttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtc 442  Q
    ||||||||||| || | || || |||||||  |||  ||||||||||  ||||||||||||| ||||| |||| |||| |||| |||||||||    
T  11911515 tttggttgtatcatatttgtatgtagacaatagttaattaatagttttcaaaactctcatgtcgagttcaataggaggtaaacgaatggggtc 11911423  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 442
Target Start/End: Complemental strand, 2087432 - 2087389
Alignment:
Q  399 aaaactctcatgttgagtttaatatgaggcaaactaatggggtc 442  Q
    |||||||||||||| | ||||||| |||||||||||||||||||    
T  2087432 aaaactctcatgttaaatttaatacgaggcaaactaatggggtc 2087389  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 453
Target Start/End: Original strand, 1394136 - 1394188
Alignment:
Q  401 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 453  Q
    ||||||||||| ||||| |||| ||||||| |||||||||||| || ||||||    
T  1394136 aactctcatgtcgagttcaataggaggcaagctaatggggtcgttcatgaatt 1394188  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 453
Target Start/End: Original strand, 48113 - 48165
Alignment:
Q  401 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 453  Q
    ||||||||||| ||||| |||| |||||||||||||  |||||||| ||||||    
T  48113 aactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaatt 48165  T

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