View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14030_low_3 (Length: 341)
Name: NF14030_low_3
Description: NF14030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14030_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 49171098 - 49170758
Alignment:
| Q |
1 |
aaatacatctaaagccatttccaatcacaattgagcaagaaaagtgtaacctaccctctctacataactcacgtcaaactcctcttgttagaccagaaaa |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49171098 |
aaatacatctaaagccattgccaatcacaattgagcaagaaaagtgtaacctaccctctctacataactcacgtcaaactcctcttgttagaccagaaaa |
49170999 |
T |
|
| Q |
101 |
gaaaaaacataaatttgtgattat-----ttggcatgtggtcctttctttactatctgcaaacaacaaagttttagagacaaccaagcccttactatatt |
195 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49170998 |
gaaaaaacataaatttgtgattatactctttggcatgtggtcctttctttactatctgcaaacaacaaagttttagagacaaccaagcccttattatatt |
49170899 |
T |
|
| Q |
196 |
cttgcgaaacaaaccccttttcataagtcaatcaagccactcctttcttctctttttaaaattcatggaagtctaaggtatactctatgtcctttttatt |
295 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49170898 |
cttgcgacacaaaccccttttcataagtcaatcaagccactcctttcttctctttttaaaattcatggaagtctaaggtatactctatgtcctttttatt |
49170799 |
T |
|
| Q |
296 |
ttgtttacttccatacttcaatctctaaatcctagaataat |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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| T |
49170798 |
ttgtttacttccatacttcaatctctaaatcctagaataat |
49170758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 8421017 - 8421345
Alignment:
| Q |
1 |
aaatacatctaaagccatttccaatcacaattgagcaagaaaagtgtaacctaccctctctacataactcacgtcaaactcctcttgttagaccagaaaa |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8421017 |
aaatacatctaaagccattgccaatcacaattgagcaagaaaagtgtaacctaccctctctacataactcacgtcaaactcctcttgttagacctgaaaa |
8421116 |
T |
|
| Q |
101 |
gaaaaaacataaatttgtgattat-----ttggcatgtggtcctttctttactatctgcaaacaacaaagttttagagacaaccaagcccttactatatt |
195 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
8421117 |
gaaaaa-cataaatttgtgattatactctttggcatgtggtcctttctttactatctgcaaacaacaaagttttagagacaaccaagaccttactcaatt |
8421215 |
T |
|
| Q |
196 |
cttgcgaaacaaaccccttttcataagtcaatcaagccactcctttcttctctttttaaaattcatggaagtctaaggtatactctatgtcctttttatt |
295 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8421216 |
cttgcgacacaaaccccttttcataagtcaatcaagccactcctttcttctctttttaaaattcatggaagtctaaggtatactctatgtcctttttatt |
8421315 |
T |
|
| Q |
296 |
ttgtttacttccatacttcaatctctaaat |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
8421316 |
ttgtttacttccatacttcaatctctaaat |
8421345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 144 - 302
Target Start/End: Complemental strand, 36732895 - 36732736
Alignment:
| Q |
144 |
ttactatctgcaaacaacaaagttttagagacaaccaagccc--ttactatattcttgcgaaacaaaccccttttcataagtcaatcaagccactccttt |
241 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||||||| |||| ||||||||| ||||||| ||| |||||| ||||||||| |||||||||||| ||| |
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| T |
36732895 |
ttactatctacaaacaacaaagttctagaaacaaccatgcccctttactatatccttgcgacacag-ccccttatcataagtctatcaagccactcattt |
36732797 |
T |
|
| Q |
242 |
cttctctttttaaaattcatggaagtctaaggtatactctatgtcctttttattttgttta |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
36732796 |
cttctctttttaaaattcatggaagtctaaggtatactctatgtcctttttatttttttta |
36732736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 336
Target Start/End: Original strand, 24422915 - 24422996
Alignment:
| Q |
254 |
aaattcatggaagtctaaggtatactctatgtcctttttattttgtttacttccatacttcaatctctaaatcctagaataat |
336 |
Q |
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|||||| ||| |||||||||||||||||||||||||| ||| ||| ||||| ||||| | |||||||| |||||||||||||| |
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| T |
24422915 |
aaattcttgggagtctaaggtatactctatgtcctttctatcttgcttactcccatattccaatctct-aatcctagaataat |
24422996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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