View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14030_low_6 (Length: 218)

Name: NF14030_low_6
Description: NF14030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14030_low_6
NF14030_low_6
[»] chr6 (35 HSPs)
chr6 (14-218)||(26861375-26861578)
chr6 (94-218)||(31284126-31284250)
chr6 (88-218)||(27593245-27593375)
chr6 (88-216)||(27677841-27677969)
chr6 (94-218)||(27678784-27678908)
chr6 (94-213)||(27706632-27706751)
chr6 (94-218)||(26622814-26622938)
chr6 (94-218)||(26728792-26728916)
chr6 (116-218)||(26884023-26884125)
chr6 (76-217)||(27338291-27338432)
chr6 (76-217)||(27399031-27399172)
chr6 (86-217)||(26655819-26655950)
chr6 (86-217)||(26761790-26761921)
chr6 (94-218)||(27229070-27229194)
chr6 (86-218)||(28786108-28786240)
chr6 (86-218)||(28792229-28792361)
chr6 (77-218)||(27698719-27698860)
chr6 (77-218)||(27725070-27725211)
chr6 (94-218)||(28780977-28781101)
chr6 (94-217)||(26802280-26802403)
chr6 (77-218)||(27718604-27718745)
chr6 (94-218)||(27611227-27611351)
chr6 (116-218)||(26823700-26823802)
chr6 (118-218)||(27604930-27605030)
chr6 (118-209)||(28325343-28325434)
chr6 (114-218)||(26646337-26646441)
chr6 (114-218)||(26752305-26752409)
chr6 (154-209)||(28242702-28242757)
chr6 (154-216)||(25579617-25579679)
chr6 (94-160)||(26018770-26018836)
chr6 (94-160)||(26139474-26139540)
chr6 (154-203)||(2184186-2184235)
chr6 (145-218)||(27531422-27531495)
chr6 (175-216)||(28098596-28098637)
chr6 (154-206)||(28234462-28234514)
[»] scaffold0277 (2 HSPs)
scaffold0277 (86-218)||(4896-5028)
scaffold0277 (94-218)||(13857-13981)
[»] scaffold0349 (3 HSPs)
scaffold0349 (77-218)||(3647-3788)
scaffold0349 (77-218)||(14580-14721)
scaffold0349 (77-183)||(8061-8167)
[»] scaffold1254 (1 HSPs)
scaffold1254 (86-218)||(142-274)
[»] scaffold0419 (1 HSPs)
scaffold0419 (86-218)||(7355-7487)
[»] chr4 (5 HSPs)
chr4 (86-218)||(18724297-18724429)
chr4 (86-218)||(18699612-18699744)
chr4 (94-218)||(18679779-18679903)
chr4 (94-218)||(18731716-18731840)
chr4 (94-218)||(18655689-18655813)
[»] chr1 (3 HSPs)
chr1 (86-212)||(28164580-28164706)
chr1 (117-212)||(28127898-28127993)
chr1 (89-218)||(268569-268698)
[»] chr8 (1 HSPs)
chr8 (94-218)||(29273995-29274119)
[»] scaffold0038 (3 HSPs)
scaffold0038 (118-209)||(116658-116749)
scaffold0038 (154-209)||(42864-42919)
scaffold0038 (154-206)||(34623-34675)
[»] scaffold0713 (1 HSPs)
scaffold0713 (94-160)||(5916-5982)
[»] scaffold0019 (1 HSPs)
scaffold0019 (118-208)||(58517-58607)
[»] scaffold0781 (1 HSPs)
scaffold0781 (154-203)||(91-140)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 26861375 - 26861578
Alignment:
Q  14 cacagaccacagttacttatttgttcatagtttgcattcccaaactattttttctcatccaattatttatcccaattctgatggctatgcaatcaccttg 113  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26861375 cacagaccacagttacttatttgttcatagtttgcattcctaaactattttttctcatccaattatttatcc-aattctgatggctatgcaatcaccttg 26861473  T
Q  114 ctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaaggct 213  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26861474 ctcttcctcttccatttcctatggattcaaataccaggtattcctcagtttcagaggaagtgacactcggtatggttttaccggtaatctctacaaggct 26861573  T
Q  214 cttac 218  Q
    |||||    
T  26861574 cttac 26861578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 94 - 218
Target Start/End: Original strand, 31284126 - 31284250
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |    
T  31284126 atggctatgcaatcatcttcctcttcctcttcaatttcctatgtattcaaataccaagtattccttagtttcaggggaagtgacactcggtatggtttca 31284225  T
Q  194 ccggcaatctctacaaggctcttac 218  Q
    |||||||||||||||||||||||||    
T  31284226 ccggcaatctctacaaggctcttac 31284250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 88 - 218
Target Start/End: Complemental strand, 27593375 - 27593245
Alignment:
Q  88 attctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatg 187  Q
    ||||| ||||||||||||||||||| ||||||| |||| ||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||| |    
T  27593375 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 27593276  T
Q  188 gttttaccggcaatctctacaaggctcttac 218  Q
    |||| ||||||||||||||||||||||||||    
T  27593275 gtttcaccggcaatctctacaaggctcttac 27593245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 27677969 - 27677841
Alignment:
Q  88 attctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatg 187  Q
    ||||| ||||||||||||||||||| ||||||| |||| ||||||||||  | |||||||||||||||||||| |||||||||||||||||||||||| |    
T  27677969 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcaatttcagaggaagtgacactcggtacg 27677870  T
Q  188 gttttaccggcaatctctacaaggctctt 216  Q
    |||| ||||||||||||||||||||||||    
T  27677869 gtttcaccggcaatctctacaaggctctt 27677841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 94 - 218
Target Start/End: Original strand, 27678784 - 27678908
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||||||||| ||||||| |||| ||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  27678784 atggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggtttca 27678883  T
Q  194 ccggcaatctctacaaggctcttac 218  Q
    |||| ||||||||||||||||||||    
T  27678884 ccgggaatctctacaaggctcttac 27678908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 94 - 213
Target Start/End: Complemental strand, 27706751 - 27706632
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||||||||| ||||||| |||| ||||||||||  | ||||||||||||||||||||||||||||||| ||||||||||||| ||||| |    
T  27706751 atggctatgcaatcacctttctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaggtgacactcggtacggtttca 27706652  T
Q  194 ccggcaatctctacaaggct 213  Q
    | ||||||||||||||||||    
T  27706651 caggcaatctctacaaggct 27706632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 94 - 218
Target Start/End: Original strand, 26622814 - 26622938
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||||||| | |||||||||||| |||||||||  ||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||| |    
T  26622814 atggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggtacggtttca 26622913  T
Q  194 ccggcaatctctacaaggctcttac 218  Q
    | || ||||||||||||||||||||    
T  26622914 ctggaaatctctacaaggctcttac 26622938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 94 - 218
Target Start/End: Original strand, 26728792 - 26728916
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||||||| | |||||||||||| |||||||||  ||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||| |    
T  26728792 atggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggtacggtttca 26728891  T
Q  194 ccggcaatctctacaaggctcttac 218  Q
    | || ||||||||||||||||||||    
T  26728892 ctggaaatctctacaaggctcttac 26728916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 218
Target Start/End: Original strand, 26884023 - 26884125
Alignment:
Q  116 cttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaaggctct 215  Q
    ||||||||||  |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||    
T  26884023 cttcctcttcattttcctatggattcacttaccaagtgttcctcagtttcagaggaagtgacactcggtatggtttcactggaaatctctacaaggctct 26884122  T
Q  216 tac 218  Q
    |||    
T  26884123 tac 26884125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 76 - 217
Target Start/End: Complemental strand, 27338432 - 27338291
Alignment:
Q  76 ttatttatcccaattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtg 175  Q
    |||||| || ||||||| |||||||||||||||| || |||||||||||| ||||||| ||| ||||||||||| || ||||||||||| || |  | ||    
T  27338432 ttatttctctcaattctcatggctatgcaatcactttcctcttcctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattg 27338333  T
Q  176 acactcggtatggttttaccggcaatctctacaaggctctta 217  Q
    ||||||  || |||||||||||||||||||||||||||||||    
T  27338332 acactctttacggttttaccggcaatctctacaaggctctta 27338291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 76 - 217
Target Start/End: Complemental strand, 27399172 - 27399031
Alignment:
Q  76 ttatttatcccaattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtg 175  Q
    |||||| || ||||||| |||||||||||||||| || |||||||||||| ||||||| ||| ||||||||||| || ||||||||||| || |  | ||    
T  27399172 ttatttctctcaattctcatggctatgcaatcactttcctcttcctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattg 27399073  T
Q  176 acactcggtatggttttaccggcaatctctacaaggctctta 217  Q
    ||||||  || |||||||||||||||||||||||||||||||    
T  27399072 acactctttacggttttaccggcaatctctacaaggctctta 27399031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 26655819 - 26655950
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggta 185  Q
    ||||||| |||||||| |||||||||| ||| ||||||||  |||||||||| || ||||||||||| ||||||||||| || || | |||||| ||| |    
T  26655819 caattctcatggctatacaatcaccttcctcatcctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggca 26655918  T
Q  186 tggttttaccggcaatctctacaaggctctta 217  Q
     |||||||||||||||||||||||||||||||    
T  26655919 cggttttaccggcaatctctacaaggctctta 26655950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 26761790 - 26761921
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggta 185  Q
    ||||||| |||||||| |||||||||| ||| ||||||||  |||||||||| || ||||||||||| ||||||||||| || || | |||||| ||| |    
T  26761790 caattctcatggctatacaatcaccttcctcatcctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggca 26761889  T
Q  186 tggttttaccggcaatctctacaaggctctta 217  Q
     |||||||||||||||||||||||||||||||    
T  26761890 cggttttaccggcaatctctacaaggctctta 26761921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 218
Target Start/End: Original strand, 27229070 - 27229194
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    |||||||| |||||||||| ||||||||||||  |||||| ||||||||  |||||||| ||||| ||||| || || | |||||||||| | |||||||    
T  27229070 atggctatacaatcaccttcctcttcctcttcattttcctttggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggtttta 27229169  T
Q  194 ccggcaatctctacaaggctcttac 218  Q
    |||||||||||||||||||||||||    
T  27229170 ccggcaatctctacaaggctcttac 27229194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 218
Target Start/End: Original strand, 28786108 - 28786240
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggta 185  Q
    ||||||| |||||||| |||||||||| ||| ||||||||  |||||||||||||||  |||||||| ||||||||||| || || | |||||||||  |    
T  28786108 caattcttatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgcca 28786207  T
Q  186 tggttttaccggcaatctctacaaggctcttac 218  Q
     ||||||||||| ||||||||||||||||||||    
T  28786208 cggttttaccggaaatctctacaaggctcttac 28786240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 218
Target Start/End: Original strand, 28792229 - 28792361
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggta 185  Q
    ||||||| |||||||| |||||||||| ||| ||||||||  |||||||||||||||  |||||||| ||||||||||| || || | |||||||||  |    
T  28792229 caattcttatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgcca 28792328  T
Q  186 tggttttaccggcaatctctacaaggctcttac 218  Q
     ||||||||||| ||||||||||||||||||||    
T  28792329 cggttttaccggaaatctctacaaggctcttac 28792361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 218
Target Start/End: Complemental strand, 27698860 - 27698719
Alignment:
Q  77 tatttatcccaattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtga 176  Q
    ||||| || ||||||| |||||||| |||||||||| ||| ||| ||||  |||||||||||||||  |||||||| ||| ||||||| || || | |||    
T  27698860 tatttctctcaattctcatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcatcagttttaggggcactga 27698761  T
Q  177 cactcggtatggttttaccggcaatctctacaaggctcttac 218  Q
    ||||||| | ||||||||||| ||||||||||||||||||||    
T  27698760 cactcggcacggttttaccggaaatctctacaaggctcttac 27698719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 218
Target Start/End: Complemental strand, 27725211 - 27725070
Alignment:
Q  77 tatttatcccaattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtga 176  Q
    ||||| || ||||| | |||||||| |||||||||| ||| ||||||||  |||||||||||||||  |||||||| ||||| ||||| || || | |||    
T  27725211 tatttctctcaattgtcatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactga 27725112  T
Q  177 cactcggtatggttttaccggcaatctctacaaggctcttac 218  Q
    ||||||| | ||||||||||| ||||||||||||||||||||    
T  27725111 cactcggcacggttttaccggaaatctctacaaggctcttac 27725070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 94 - 218
Target Start/End: Original strand, 28780977 - 28781101
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||| ||||| ||||||||||||  |||||| || |||||  |||||||| ||||||||||| || || | |||||||||  | |||||||    
T  28780977 atggctatgcaattaccttcctcttcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggtttta 28781076  T
Q  194 ccggcaatctctacaaggctcttac 218  Q
    |||||||||||||||||||||||||    
T  28781077 ccggcaatctctacaaggctcttac 28781101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 26802280 - 26802403
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||| || |||| ||| ||||||||  |||| ||||||||||  |||||||| ||||||||||| || || | |||||||||||| |||||||    
T  26802280 atggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggtttta 26802379  T
Q  194 ccggcaatctctacaaggctctta 217  Q
    | ||||||||||||||||||||||    
T  26802380 cgggcaatctctacaaggctctta 26802403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 77 - 218
Target Start/End: Complemental strand, 27718745 - 27718604
Alignment:
Q  77 tatttatcccaattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtga 176  Q
    ||||| || ||||||| |||||||| |||||||||| ||| ||||||||  | ||| |||||||||  |||||||| ||||||||||| || || | |||    
T  27718745 tatttctctcaattctcatggctatacaatcaccttcctcatcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactga 27718646  T
Q  177 cactcggtatggttttaccggcaatctctacaaggctcttac 218  Q
    ||||||| |  |||||||||| ||||||||||||||||||||    
T  27718645 cactcggcacagttttaccggaaatctctacaaggctcttac 27718604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 27611351 - 27611227
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||| | ||| |||||| |||||  |||||||||||||||  |||||||| ||||||||||| || || | |||||||||  | |||||||    
T  27611351 atggctatgcaattagcttcctcttcttcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggtttta 27611252  T
Q  194 ccggcaatctctacaaggctcttac 218  Q
    |||| ||||||||||||||||||||    
T  27611251 ccggaaatctctacaaggctcttac 27611227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 116 - 218
Target Start/End: Original strand, 26823700 - 26823802
Alignment:
Q  116 cttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaaggctct 215  Q
    ||||||||||  |||| ||||  |||||||||||||| || |||||||| |||||   ||||||||||||||  ||||||||||||||||||||||||||    
T  26823700 cttcctcttcagtttcatatgatttcaaataccaagtgtttctcagttttagaggcgctgacactcggtatgaatttaccggcaatctctacaaggctct 26823799  T
Q  216 tac 218  Q
    |||    
T  26823800 tac 26823802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 27605030 - 27604930
Alignment:
Q  118 tcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaaggctctta 217  Q
    ||||||||  ||||||||| |||||  |||||||| ||||| ||||| || || | ||||||||| || |||||||||||||||||||||||||||||||    
T  27605030 tcctcttcattttcctatgcattcacttaccaagtgttccttagttttaggggcactgacactcgatacggttttaccggcaatctctacaaggctctta 27604931  T
Q  218 c 218  Q
    |    
T  27604930 c 27604930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 28325343 - 28325434
Alignment:
Q  118 tcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaa 209  Q
    ||||||||| |||||||||||||||  ||  | || ||||| ||||| ||||| ||||||||||| ||||||||||| || |||||||||||    
T  28325343 tcctcttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaa 28325434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 26646337 - 26646441
Alignment:
Q  114 ctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaaggct 213  Q
    |||||||||||  |||||||| |||||||  ||||| || |||||||  ||||| || |||||||||||  | |||||||| ||  ||||||||||||||    
T  26646337 ctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaaggct 26646436  T
Q  214 cttac 218  Q
    |||||    
T  26646437 cttac 26646441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 26752305 - 26752409
Alignment:
Q  114 ctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaaggct 213  Q
    |||||||||||  |||||||| |||||||  ||||| || |||||||  ||||| || |||||||||||  | |||||||| ||  ||||||||||||||    
T  26752305 ctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaaggct 26752404  T
Q  214 cttac 218  Q
    |||||    
T  26752405 cttac 26752409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 28242702 - 28242757
Alignment:
Q  154 ttcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaa 209  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||| || |||||||||||    
T  28242702 ttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaa 28242757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 25579617 - 25579679
Alignment:
Q  154 ttcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaaggctctt 216  Q
    ||||||||||||||||| |||||||||||  |   ||||||||| |||||||| |||||||||    
T  25579617 ttcctcagtttcagaggcagtgacactcgcaacacttttaccggtaatctctataaggctctt 25579679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 26018836 - 26018770
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctca 160  Q
    |||||||| ||||||||||  ||| |||| ||| ||||||||||| ||| ||||||||| |||||||    
T  26018836 atggctattcaatcaccttcgtctacctcatccttttcctatggactcacataccaagtgttcctca 26018770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 26139540 - 26139474
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctca 160  Q
    |||| ||| |||||||||| |||| |||| ||| ||||||||||| ||| ||||||||| |||||||    
T  26139540 atggttattcaatcaccttcctctacctcatccttttcctatggactcacataccaagtgttcctca 26139474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 2184186 - 2184235
Alignment:
Q  154 ttcctcagtttcagaggaagtgacactcggtatggttttaccggcaatct 203  Q
    ||||| ||||||||||||  |||||||||  |||||||||||||||||||    
T  2184186 ttcctaagtttcagaggagctgacactcgccatggttttaccggcaatct 2184235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 27531495 - 27531422
Alignment:
Q  145 taccaagtattcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaaggctcttac 218  Q
    |||||||| ||||||||||| || ||    ||||||||  | ||||||||||| ||||||||||||||||||||    
T  27531495 taccaagtgttcctcagttttaggggcgcggacactcgccacggttttaccggaaatctctacaaggctcttac 27531422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 28098637 - 28098596
Alignment:
Q  175 gacactcggtatggttttaccggcaatctctacaaggctctt 216  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  28098637 gacactcggtatggttttactggaaatctctacaaagctctt 28098596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 28234462 - 28234514
Alignment:
Q  154 ttcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctcta 206  Q
    ||||| ||||| ||||| ||||||||||| |||||||||||||  ||||||||    
T  28234462 ttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctcta 28234514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 5028 - 4896
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggta 185  Q
    ||||||| |||||||| |||||||||| ||| ||||||||  |||||||||||||||  |||||||| ||||||||||| || || | |||||||||  |    
T  5028 caattcttatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcattgacactcgcca 4929  T
Q  186 tggttttaccggcaatctctacaaggctcttac 218  Q
     ||||||||||| ||||||||||||||||||||    
T  4928 cggttttaccggaaatctctacaaggctcttac 4896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 13981 - 13857
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||| ||||| ||||||||||||  |||||| || |||||  |||||||| ||||||||||| || || | |||||||||  | |||||||    
T  13981 atggctatgcaattaccttcctcttcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggtttta 13882  T
Q  194 ccggcaatctctacaaggctcttac 218  Q
    |||||||||||||||||||||||||    
T  13881 ccggcaatctctacaaggctcttac 13857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 218
Target Start/End: Complemental strand, 3788 - 3647
Alignment:
Q  77 tatttatcccaattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtga 176  Q
    ||||| || ||||| | |||||||| |||||||||| ||| ||||||||  |||||||||||||||  |||||||| ||||| ||||| || || | |||    
T  3788 tatttctctcaattgtcatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactga 3689  T
Q  177 cactcggtatggttttaccggcaatctctacaaggctcttac 218  Q
    ||||||| | ||||||||||| ||||||||||||||||||||    
T  3688 cactcggcacggttttaccggaaatctctacaaggctcttac 3647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 218
Target Start/End: Complemental strand, 14721 - 14580
Alignment:
Q  77 tatttatcccaattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtga 176  Q
    ||||| || ||||||| |||||||| |||||||||| ||| ||| ||||  |||||||||||||||  |||||||| ||| ||||||| || || | |||    
T  14721 tatttctctcaattctcatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcatcagttttaggggcactga 14622  T
Q  177 cactcggtatggttttaccggcaatctctacaaggctcttac 218  Q
    ||||||| | ||||||||||| ||||||||||||||||||||    
T  14621 cactcggcacggttttaccggaaatctctacaaggctcttac 14580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 8167 - 8061
Alignment:
Q  77 tatttatcccaattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtga 176  Q
    ||||| || ||||||| |||||||| |||||||||| ||| ||||||||  | ||| |||||||||  |||||||| ||||||||||| || || | |||    
T  8167 tatttctctcaattctcatggctatacaatcaccttcctcatcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactga 8068  T
Q  177 cactcgg 183  Q
    |||||||    
T  8067 cactcgg 8061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 274 - 142
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggta 185  Q
    ||||||| ||||||||||||||||||  ||||||||||||  |||| |||| |||||  |||||||| ||||| ||||| || || | |||||||||  |    
T  274 caattctcatggctatgcaatcacctccctcttcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgcca 175  T
Q  186 tggttttaccggcaatctctacaaggctcttac 218  Q
     ||||||||||||||||||||||||||||||||    
T  174 cggttttaccggcaatctctacaaggctcttac 142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 86 - 218
Target Start/End: Original strand, 7355 - 7487
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggta 185  Q
    ||||||| ||||||||||||||||||  ||||||||||||  |||| |||| |||||  |||||||| ||||| ||||| || || | |||||||||  |    
T  7355 caattctcatggctatgcaatcacctccctcttcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgcca 7454  T
Q  186 tggttttaccggcaatctctacaaggctcttac 218  Q
     ||||||||||||||||||||||||||||||||    
T  7455 cggttttaccggcaatctctacaaggctcttac 7487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 18724429 - 18724297
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggta 185  Q
    ||||||| ||||||||||||||||||| ||| ||||||||  |||||||| ||||||  |||||||| |||||||| ||||| || |||||||||||  |    
T  18724429 caattctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaa 18724330  T
Q  186 tggttttaccggcaatctctacaaggctcttac 218  Q
     |||||||| ||  |||||||||||||||||||    
T  18724329 cggttttactggtcatctctacaaggctcttac 18724297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 18699744 - 18699612
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggta 185  Q
    ||||||| ||||||||||||||||||| ||| ||||||||  |||||||| ||||||  |||||||| |||||||| ||||| || | |||||||||  |    
T  18699744 caattctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcactgacactcgtga 18699645  T
Q  186 tggttttaccggcaatctctacaaggctcttac 218  Q
     |||||||| ||| |||||||||| ||||||||    
T  18699644 cggttttactggccatctctacaaagctcttac 18699612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 18679903 - 18679779
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||||||||| ||| | ||||||  |||||||| ||||||  |||||||| |||||||| ||||| || |||||||||||  | |||||||    
T  18679903 atggctatgcaatcaccttcctcattctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggtttta 18679804  T
Q  194 ccggcaatctctacaaggctcttac 218  Q
    | ||  |||||||||||||||||||    
T  18679803 ctggtcatctctacaaggctcttac 18679779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 18731840 - 18731716
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||||||||| ||| ||||||||  |||||||| ||||||  |||||||| |||||||| ||||| || |||||||||||  | |||||||    
T  18731840 atggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtgacggtttta 18731741  T
Q  194 ccggcaatctctacaaggctcttac 218  Q
    | ||| |||||||||  ||||||||    
T  18731740 ctggccatctctacagagctcttac 18731716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 18655813 - 18655689
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||| ||||||||||| ||| ||||||||  |||||||| ||||||  |||||||| |||||||| ||||| || |||||||||||  | |||||||    
T  18655813 atggctaggcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggtttta 18655714  T
Q  194 ccggcaatctctacaaggctcttac 218  Q
    | ||  |||||||||| ||||||||    
T  18655713 ctgggcatctctacaaagctcttac 18655689  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 212
Target Start/End: Complemental strand, 28164706 - 28164580
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggta 185  Q
    ||||||| |||||||| | ||| | || |||||||||||| |||||||||||||||| ||||||||| ||||||||||| || || |||||||||||  |    
T  28164706 caattctcatggctatacgatcgcattcctcttcctcttcaatttcctatggattcacataccaagtgttcctcagttttaggggcagtgacactcgtga 28164607  T
Q  186 tggttttaccggcaatctctacaaggc 212  Q
     ||||| || ||| ||||||| |||||    
T  28164606 cggtttcactggccatctctataaggc 28164580  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 28127993 - 28127898
Alignment:
Q  117 ttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaaggc 212  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||| ||||| || |||||||||||  | ||||| || ||| |||||||||||||    
T  28127993 ttcctcttcaatttcctatggattcacataccaagtgttcctcagcttcaggggcagtgacactcgtgacggtttcactggccatctctacaaggc 28127898  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 268698 - 268569
Alignment:
Q  89 ttctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatgg 188  Q
    |||| ||||||||||||||||||| |||||||||||| || || ||||||||    ||||| || |||||||  ||||||||  ||||||||||  | ||    
T  268698 ttctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatttgcctaccaggtcttcctcaacttcagaggcggtgacactcgtgaggg 268599  T
Q  189 ttttaccggcaatctctacaaggctcttac 218  Q
    |||||  ||| |||||||||||||||||||    
T  268598 ttttattggccatctctacaaggctcttac 268569  T

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Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 29274119 - 29273995
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||||||||| |||||||||||| || || ||||||||||  ||||| || |||||||  || |||||  ||||||||||  | |||||||    
T  29274119 atggctatgcaatcaccttcctcttcctcttcaatctcatatggattcacttaccaggtcttcctcaactttagaggcggtgacactcgtgacggtttta 29274020  T
Q  194 ccggcaatctctacaaggctcttac 218  Q
      ||| ||||||||||| |||||||    
T  29274019 ttggccatctctacaagactcttac 29273995  T

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Target: scaffold0038 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 116658 - 116749
Alignment:
Q  118 tcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaa 209  Q
    ||||||||| |||||||||||||||  ||  | || ||||| ||||| ||||| ||||||||||| ||||||||||| || |||||||||||    
T  116658 tcctcttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaa 116749  T

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Target: scaffold0038; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 42864 - 42919
Alignment:
Q  154 ttcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaa 209  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||| || |||||||||||    
T  42864 ttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaa 42919  T

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Target: scaffold0038; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 34623 - 34675
Alignment:
Q  154 ttcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctcta 206  Q
    ||||| ||||| ||||| ||||||||||| |||||||||||||  ||||||||    
T  34623 ttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctcta 34675  T

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Target: scaffold0713 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 5916 - 5982
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctca 160  Q
    |||| ||| |||||||||| |||| |||| ||| ||||||||||| ||| ||||||||| |||||||    
T  5916 atggttattcaatcaccttcctctacctcatccttttcctatggactcacataccaagtgttcctca 5982  T

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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 58607 - 58517
Alignment:
Q  118 tcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctaca 208  Q
    ||||||||| | |||||||||||||  || || || ||||| || || |||||  |||||||||| ||||||||||| || ||||||||||    
T  58607 tcctcttccttctcctatggattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactggaaatctctaca 58517  T

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Target: scaffold0781 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 140 - 91
Alignment:
Q  154 ttcctcagtttcagaggaagtgacactcggtatggttttaccggcaatct 203  Q
    ||||| ||||||||||||  |||||||||  |||||||||||||||||||    
T  140 ttcctaagtttcagaggagctgacactcgccatggttttaccggcaatct 91  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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