View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_high_1 (Length: 997)
Name: NF14031_high_1
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_high_1 |
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| [»] scaffold0171 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 899; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 899; E-Value: 0
Query Start/End: Original strand, 7 - 978
Target Start/End: Original strand, 36733674 - 36734651
Alignment:
| Q |
7 |
tggacatcatcaccttattggttcaatacctcaccaaggacttcataaactttcaacaaaatatggacctataatacaccttttcctaggttccatgcct |
106 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36733674 |
tggacatcttcaccttattggttcaatacctcaccaaggacttcacaaactttcaacaaaatatggacctataatacaccttttcctaggttccatgcct |
36733773 |
T |
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| Q |
107 |
tgtgttgtagcttccacaccagaatccgctaaagagtttcttaaaactcacgaaacctatttctccaaccgtcctcaaagttcagctgttgattatctaa |
206 |
Q |
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| T |
36733774 |
tgtgttgtagcttccacaccagaatccgctaaagagtttcttaaaactcacgaaacctatttctccaaccgtcctcaaagttcagctgttgattatctaa |
36733873 |
T |
|
| Q |
207 |
catatggctcacaagatttttcctttgctccatatggaccttattggaaatttatcaagaaaatatgcatgtctgaacttcttggtggtaacacattgag |
306 |
Q |
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| T |
36733874 |
catatggctcacaagatttttcctttgctccatatggaccttattggaaatttatcaagaaaatatgcatgtctgaacttcttggtggtaacacattgag |
36733973 |
T |
|
| Q |
307 |
tcaacttcttcctttaaggagacaagagacaacaaggtttgttagttttttgctcaagaaagggaaggagaatgaggttattgatgttggaagagagctt |
406 |
Q |
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| T |
36733974 |
tcaacttcttcctttaaggagacaagagacaacaaggtttgttagttttttgctcaagaaagggaaggagaatgaggttattgatgttggaagagagctt |
36734073 |
T |
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| Q |
407 |
ttgaagttgtcgaataacgttatttcgaggatgattatgagccaaacttgtagtgaaaatgatggtgaagctgaagaggtgaggaagttggtgcaagaca |
506 |
Q |
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| T |
36734074 |
ttgaagttgtcgaataacgttatttcaaggatgattatgagccaaacttgtagtgaaaatgatggtgaagctgaagaggtgaggaagttggtgcaagaca |
36734173 |
T |
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| Q |
507 |
ctgtacatcttacggggaagtttaatatttctgattttatttggttttttaagaactgggatgtccaggggtttagcaaagggttaaaggaaattaggga |
606 |
Q |
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| T |
36734174 |
ctgtacatcttacggggaagtttaatatttctgattttatttggttttttaagaactgggatgtccaggggtttagcaaagggttagaggaaattaggga |
36734273 |
T |
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| Q |
607 |
caggtttgattctatgatggagaggattatcaaggagcatcaagaagtaaggaggaggagaaaggaagttggtggaggagaaggtcaaattaaggatcta |
706 |
Q |
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| T |
36734274 |
caggtttgattctatgatggagaggattatcaaggagcatcaagaagtaaggaggaggagaaaagaagttggtggaggagaaggtcaaattaaggatcta |
36734373 |
T |
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| Q |
707 |
cttgatattttattggatattcttgaagatgagagctctgaaatcaaattgaaaatggagaacataaaagccttcatcttggtaagtgacaagtgactca |
806 |
Q |
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| T |
36734374 |
cttgatattttattggatattcttgaagatgagagctctgaaatcaaattgaaaatggagaacataaaagccttcatcttggtaagtgacaagtgactca |
36734473 |
T |
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| Q |
807 |
gatttacattatatgcac------tcgtattttgattttgtttttaaaatataattggcgaacttgaaacatgaaacttcttatcttaatctaacagccg |
900 |
Q |
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| T |
36734474 |
gatttacattatatgcactctagatcgtattttgattttgtttttaaaatataattggcgaacttgaaacatgaaacttcttatcttgatctaacggccg |
36734573 |
T |
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| Q |
901 |
tgatcattgattgacttacatagtcgatatctagttgagtctatgaacaatattgcatttttcttttattcacttata |
978 |
Q |
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| T |
36734574 |
tgatcattgattgacttaaatagtcgatatctagttacgtctacgaccaatattgcattttccttttatttacttata |
36734651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 25168110 - 25168224
Alignment:
| Q |
48 |
ttcataaactttcaacaaaatatggacctataatacaccttttcctaggttccatgccttgtgttgtagcttccacaccagaatccgctaaagagtttct |
147 |
Q |
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||||||| ||||||| |||||||||| ||||| || ||||||||||| || || |||||| | ||| |||| | |||||| || ||||||||||| |
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| T |
25168110 |
ttcataagctttcaattcaatatggacccataattcaacttttcctaggctctataccttgtatagtaacttcaaatccagaaatagccaaagagtttct |
25168209 |
T |
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| Q |
148 |
taaaactcacgaaac |
162 |
Q |
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| T |
25168210 |
taaaactcacgaaac |
25168224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 488 - 568
Target Start/End: Original strand, 18973 - 19053
Alignment:
| Q |
488 |
aggaagttggtgcaagacactgtacatcttacggggaagtttaatatttctgattttatttggttttttaagaactgggat |
568 |
Q |
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| T |
18973 |
aggaagatggtgcaagatagtgtagagctttcagggaggtttaatttgtcggattttatttggttttttaagaattgggat |
19053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 696 - 758
Target Start/End: Original strand, 24587 - 24649
Alignment:
| Q |
696 |
ttaaggatctacttgatattttattggatattcttgaagatgagagctctgaaatcaaattga |
758 |
Q |
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| T |
24587 |
ttaaggatttgcttgatattttgttggaaattcatgaagatgagagcagtgaaataaaattga |
24649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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