View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_high_11 (Length: 503)
Name: NF14031_high_11
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 306 - 499
Target Start/End: Original strand, 36465 - 36658
Alignment:
| Q |
306 |
cattgactctttcttcacctttgtgttgcagtcgataggttctcttcaaaagaaatattcgattggatcttttgaattgctaagtaagactgctcccatt |
405 |
Q |
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| T |
36465 |
cattgactctttcttcacctttgtgttgcagtcgataggttctcttcaaaagaaatattcgattggatcttttgaattgctaagtaagactgctcccatt |
36564 |
T |
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| Q |
406 |
caatctctttttcttcttactattggtccatttgttgattactacttgagtggcaaattgataaccaactataagatgtctttcggtgcctttg |
499 |
Q |
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| T |
36565 |
caatctctttttcttcttactattggtccatttgttgattactacttgagtggcaaattgataaccaactataagatgtctttcggtgcctttg |
36658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 36149 - 36402
Alignment:
| Q |
1 |
caacaaattgtaagtattatgtactatttatgttttgtgctggaagtatatacgaaagtttttgctatttctgttgccacattttttaccagacaccatt |
100 |
Q |
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| T |
36149 |
caacaaattgtaagtattatgtactatttatgttttgtgctggaagtatatatgaaagtttttgctatttctgttgccacattttttaccagacaccatt |
36248 |
T |
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| Q |
101 |
tatga---------------taagtatagataatggttgaaaacggacttcactagatttagaatcattaccggaagcattgttttttaccttttaatcg |
185 |
Q |
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| T |
36249 |
tatgaatcatgaattggtgataagtatagataatggttgaaa-cggacttcactagatttagaatcattaccggaagcattgttttttaccttttaatcg |
36347 |
T |
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| Q |
186 |
tcattattaaatgatgatgagtatgagagaatatgagaacttaagttctactattaca |
243 |
Q |
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| T |
36348 |
tcattattaa---atgatgagtatgagagaatatgagaacttacgttctactattaca |
36402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 332 - 487
Target Start/End: Complemental strand, 8675837 - 8675682
Alignment:
| Q |
332 |
tgcagtcgataggttctcttcaaaagaaatattcgattggatcttttgaattgctaagtaagactgctcccattcaatctctttttcttcttactattgg |
431 |
Q |
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||||||| || |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |||| | |||| ||| | |||| |
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| T |
8675837 |
tgcagtcaatcggttctctgcaaaagaaatattcgattggatcttttgaactgctgagtaagactgctcctattcaagctctctctcttattattcttgg |
8675738 |
T |
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| Q |
432 |
tccatttgttgattactacttgagtggcaaattgataaccaactataagatgtctt |
487 |
Q |
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| T |
8675737 |
tccatttgttgattactatctcagtggcaagttgataaccaactttaagatgtctt |
8675682 |
T |
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