View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_high_12 (Length: 488)
Name: NF14031_high_12
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 8 - 470
Target Start/End: Original strand, 34317530 - 34317993
Alignment:
| Q |
8 |
cagcagagatggtatcaaagtgctaaatcgaatctctgaggacatatgcttgaatggtaagccaaagaaaatgatgtagaagaaatcaagaaactat-at |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34317530 |
cagcagagatggtatcaaagtgctaaatcgaatctctgaggacatatgcttgaatggtaagccaaagaaaatgatgtagaagaaatcaagaaactattat |
34317629 |
T |
|
| Q |
107 |
aactggcaaaaatagtaaacgtgttttagtgtaacatatacgtgtttcttaaactgggttggtgtggatttctaaaaatcaaatttgtttgctaagaaaa |
206 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34317630 |
aactggcaaaaatagtatacgtgttttagtggaacatatacgtgtttcttaaactgggttggtgtggatttctaaaaatcaaatttgtttggtaagaaaa |
34317729 |
T |
|
| Q |
207 |
tatataaagaagaaaagtccaacaattgtttgtagtatactaggaaaatatttaaaattacgttagcaagatttatttacattattgcctagannnnnnn |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34317730 |
tatataaagaagaaaagtccaacaattgtttgtagtatactaggaaaatatttaaaattacgttagcaagatttatttacattattgcctagattttttt |
34317829 |
T |
|
| Q |
307 |
nngaaaaatcaaaaatgggatatattaacgaaggcgatgatacctccctatcacaaggtgtatcaaggaagtcgccccaagaaacaatcagtcaagtata |
406 |
Q |
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| T |
34317830 |
ttgaaaaataaaaaatggaatatattaacgaaggcgatgatacctccctattacaaggtgtaccaaggaagtcgtcccaagaaacaaccagtcaagtata |
34317929 |
T |
|
| Q |
407 |
ataattacagaaacacggtcagtacccaaataaataaaagggtccgaccatcatatatgagaac |
470 |
Q |
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| T |
34317930 |
ataattacagaaacacggtcagtacccaaacaaataaaaaggtccgaccaccatctatgagaac |
34317993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 317 - 470
Target Start/End: Complemental strand, 33822187 - 33822030
Alignment:
| Q |
317 |
aaaaatgggatatattaacgaaggcgatgatacctccctatcacaaggtgtatcaaggaagtcgccccaagaaacaatcagtcaagtataataattacag |
416 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||| | | |||||||||||||||||||||| ||||||||| |
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| T |
33822187 |
aaaaatggaatatattaactaaggcgatgatacctccctagcacaaggtgtaccaaggaagccatctcaagaaacaatcagtcaagtattataattacaa |
33822088 |
T |
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| Q |
417 |
aaacacggtcag----tacccaaataaataaaagggtccgaccatcatatatgagaac |
470 |
Q |
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|||||||||||| |||||||| |||| |||||||||||| | ||| ||||||||| |
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| T |
33822087 |
aaacacggtcagtcgatacccaaacaaatcaaagggtccgactaccatctatgagaac |
33822030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 317 - 454
Target Start/End: Original strand, 23897755 - 23897896
Alignment:
| Q |
317 |
aaaaatgggatatattaacgaaggcgatgatacctccctatcacaaggtgtatcaaggaagtcgccccaagaaacaatcagtcaagtataataattacag |
416 |
Q |
| |
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||||| || |||||||||| |||||||||||||||||||| |||||||| || |||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
23897755 |
aaaaacggaatatattaactaaggcgatgatacctccctagcacaaggtataccaaggaagccatcccaagaaacaatcagtcaagtataataattacaa |
23897854 |
T |
|
| Q |
417 |
aaacacggtcag----tacccaaataaataaaagggtccgac |
454 |
Q |
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|||||||||||| |||| ||| |||| |||||||||||| |
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| T |
23897855 |
aaacacggtcagccgatacctaaacaaatcaaagggtccgac |
23897896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 456
Target Start/End: Complemental strand, 7319934 - 7319833
Alignment:
| Q |
359 |
acaaggtgtatcaaggaagtcgccccaagaaacaatcagtcaagtataataattacagaaacacggtcag----tacccaaataaataaaagggtccgac |
454 |
Q |
| |
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||||| |||| |||||||||| |||||||||||||||||||||| ||||||||||| ||||||||| || |||||||| |||| | |||||||||| |
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| T |
7319934 |
acaagatgtaccaaggaagtcatcccaagaaacaatcagtcaagtgtaataattacaaaaacacggttagtcgatacccaaacaaatcatagggtccgac |
7319835 |
T |
|
| Q |
455 |
ca |
456 |
Q |
| |
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|| |
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|
| T |
7319834 |
ca |
7319833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 413
Target Start/End: Original strand, 31394866 - 31394962
Alignment:
| Q |
317 |
aaaaatgggatatattaacgaaggcgatgatacctccctatcacaaggtgtatcaaggaagtcgccccaagaaacaatcagtcaagtataataatta |
413 |
Q |
| |
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|||||||| |||||||||| ||| |||||||| | |||| ||||||||||| ||||||| | ||||||||||||||| |||||||||||||||| |
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| T |
31394866 |
aaaaatggaatatattaactaagacgatgatattttcctagcacaaggtgtactaaggaagccatcccaagaaacaatcaatcaagtataataatta |
31394962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 426
Target Start/End: Original strand, 33575746 - 33575862
Alignment:
| Q |
309 |
gaaaaatcaaaaatgggatatattaacgaaggcgatgatacctccctatcacaaggtgtatcaaggaagtcgccccaagaaacaatcagtcaagtataat |
408 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| | |||| |||| |||||| |||| |||| ||||| ||||| |||||| ||||||||| |||| |
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|
| T |
33575746 |
gaaaaatcaaaaatgaaatatattaagtaaggcgataacaccttcctagcacaagatgtaccaagaaagtcatcccaaaaaacaa-cagtcaagtgtaat |
33575844 |
T |
|
| Q |
409 |
aattacagaaacacggtc |
426 |
Q |
| |
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||||||| ||||||||| |
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| T |
33575845 |
aattacaataacacggtc |
33575862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 421
Target Start/End: Complemental strand, 14586273 - 14586169
Alignment:
| Q |
317 |
aaaaatgggatatattaacgaaggcgatgatacctccctatcacaaggtgtatcaaggaagtcgccccaagaaacaatcagtcaagtataataattacag |
416 |
Q |
| |
|
|||| ||| |||||||||| ||||| |||| |||| | || ||||||||||| || ||| | |||||||||||||||| |||| | ||||||||||| |
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| T |
14586273 |
aaaattggaatatattaacaaaggcaatgaaacctgcttagcacaaggtgtactaaagaaaccaccccaagaaacaatcaatcaatcaaaataattacag |
14586174 |
T |
|
| Q |
417 |
aaaca |
421 |
Q |
| |
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||||| |
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|
| T |
14586173 |
aaaca |
14586169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 421
Target Start/End: Complemental strand, 14620804 - 14620700
Alignment:
| Q |
317 |
aaaaatgggatatattaacgaaggcgatgatacctccctatcacaaggtgtatcaaggaagtcgccccaagaaacaatcagtcaagtataataattacag |
416 |
Q |
| |
|
||||||| |||||||||| ||||| |||| |||| | || |||||| |||| || ||| | |||||||||| |||||||||| | ||||||||||| |
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|
| T |
14620804 |
aaaaatgtaatatattaacaaaggcaatgaaacctgcttagcacaagctgtactaaagaaaccaccccaagaaataatcagtcaatcaaaataattacag |
14620705 |
T |
|
| Q |
417 |
aaaca |
421 |
Q |
| |
|
||||| |
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|
| T |
14620704 |
aaaca |
14620700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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