View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_high_13 (Length: 487)
Name: NF14031_high_13
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 10 - 469
Target Start/End: Original strand, 48450914 - 48451375
Alignment:
| Q |
10 |
ataatactggttaaatttgacaaatgtttttgtttcatgttgttgc----agggttcagactccttagcatcttggcaagcaaacctcttctttgagcct |
105 |
Q |
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| T |
48450914 |
ataatattgattaaatttgacaaatgtttttgtttcatgttgttgcttgcagggttcagactccttagcatcttggcaagcaaacctcttctttgagcct |
48451013 |
T |
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| Q |
106 |
actaaatttgaggtaagaactaagaacaagatttatggaatggatagataggcctttcattgtcgtgttgccagaagaacaaatgataagaaaaaa-cac |
204 |
Q |
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| T |
48451014 |
actaaatttgaggtaagaactaagaacaatatttatggaatggatagataggcctttcattgtcgtgttgccagaa---caaatgataagaaaaaaacag |
48451110 |
T |
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| Q |
205 |
catagcactaataatctattctcttacagaacacagacgtacttgttcatagaggaatttatgaagctgcaaaaggaatatatgaacaattcatgccgga |
304 |
Q |
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| T |
48451111 |
catagcactaataatctattctcttacagaacacagacgtacttgttcatagaggaatttatgaagctgcaaaaggaatatatgaacaattcatgccaga |
48451210 |
T |
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| Q |
305 |
aataatggaccatttgaaaagacatggggatcgcgcgaagcttcaattcactggacattcccttggcggcagtctctctcttttggttcatttgatgcta |
404 |
Q |
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| T |
48451211 |
aataatggaccatttgaaaagacatggggatcgcgcgaagcttcaattcactggacattcccttggcggcagtctctctcttttggttcatttgatgcta |
48451310 |
T |
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| Q |
405 |
ttgactaggaaagttgtcagtccctcaactcttaaaccagtagtgacttttggttcaccatttgt |
469 |
Q |
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| T |
48451311 |
ttgactaggaaagttgtcagcccctcaactcttaaaccagtagtgacttttggttcaccatttgt |
48451375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 39146333 - 39146268
Alignment:
| Q |
56 |
agggttcagactccttagcatcttggcaagcaaacctcttctttgagcctactaaatttgaggtaa |
121 |
Q |
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||||||| || || ||||||||||||||||||||||| | |||||||| | |||||||||||||| |
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| T |
39146333 |
agggttcggagtcattagcatcttggcaagcaaacctactttttgagccaattaaatttgaggtaa |
39146268 |
T |
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