View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14031_high_14 (Length: 475)

Name: NF14031_high_14
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14031_high_14
NF14031_high_14
[»] chr5 (3 HSPs)
chr5 (11-458)||(10255790-10256237)
chr5 (46-459)||(10238406-10238819)
chr5 (36-459)||(10229616-10230039)


Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 11 - 458
Target Start/End: Complemental strand, 10256237 - 10255790
Alignment:
Q  11 cagagacaagagaactatgtcttcatccctacgacaccgacaacttggtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctcct 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10256237 cagagacaaaagaactatgtcttcatccctacgacaccgacaacttggtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctcct 10256138  T
Q  111 tggcaacttcacttccgccacaatctcaaactccggcgacttagcatccatcaccaaaaacttagactctcccttcttctcatcatgaacataactcact 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  10256137 tggcaacttcacttccgccacaatctcaaactccggcgacttagcatccatcaccaaaaacttagactctccctttttctcatcatgcacataactcact 10256038  T
Q  211 aaataaccatcatcctcttcatcaccatcctccctcgccacgaaaaacggctcaccaccataacaatcctctccatacaacctacacccaacttcctccc 310  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10256037 aaataaccatcatcctcttcttcaccatcctccctcgccacgaaaaacggctcaccaccataacaaccctctccatacaacctacacccaacttcctccc 10255938  T
Q  311 ctttcaacacatctatcttcaccacgccagaaatcttcggcattggattcccaattgccgcataaacaaacctattcttcttccccatataatcaccatt 410  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10255937 ctttcaacacatctatcttcaccaccccagaaatcttcggcattggattcccaattgccgcataaacaaacctattcttcttccccatataatcaccatt 10255838  T
Q  411 tatcaccgcgaaatccaggtttcgcgccgataatggttgtcttgatac 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10255837 tatcaccgcgaaatccaggtttcgcgccgataatggttgtcttgatac 10255790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 46 - 459
Target Start/End: Original strand, 10238406 - 10238819
Alignment:
Q  46 accgacaacttggtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctccttggcaacttcacttccgccacaatctcaaactccg 145  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10238406 accgacaacctcgtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctccttggcaacttcacttccgccacaatctcaaactccg 10238505  T
Q  146 gcgacttagcatccatcaccaaaaacttagactctcccttcttctcatcatgaacataactcactaaataaccatcatcctcttcatcaccatcctccct 245  Q
    | |||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||    
T  10238506 gagacttagcatccatcaccaaaaaccttgactctcccttcttctcatcatgcacataactcactaaataaccatcatcctcttcctcaccatcttccct 10238605  T
Q  246 cgccacgaaaaacggctcaccaccataacaatcctctccatacaacctacacccaacttcctcccctttcaacacatctatcttcaccacgccagaaatc 345  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |    
T  10238606 agccacgaaaaacggctcaccaccataacaatcctctccatacaacctacacccaacttcctcccctttcaacacatctatcttcaccacccccgaaaac 10238705  T
Q  346 ttcggcattggattcccaattgccgcataaacaaacctattcttcttccccatataatcaccatttatcaccgcgaaatccaggtttcgcgccgataatg 445  Q
    |||||||||||||||||||| ||||| |||| |||||| |  |||||||||| | | |||   |||||||| || ||||| || ||||  || ||||| |    
T  10238706 ttcggcattggattcccaatcgccgcgtaaataaacctgtgtttcttccccaaaaactcattgtttatcactgccaaatcaagatttcttgctgataacg 10238805  T
Q  446 gttgtcttgatact 459  Q
    ||||||||| ||||    
T  10238806 gttgtcttgttact 10238819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 36 - 459
Target Start/End: Original strand, 10229616 - 10230039
Alignment:
Q  36 tccctacgacaccgacaacttggtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctccttggcaacttcacttccgccacaatc 135  Q
    |||||||||||||||||||||||| |||||||| |  |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  10229616 tccctacgacaccgacaacttggttatgtcactttgcttcacaaacaatccatgaaaaccatagggcaccctcctcggcaacttcacctccgccacaatc 10229715  T
Q  136 tcaaactccggcgacttagcatccatcaccaaaaacttagactctcccttcttctcatcatgaacataactcactaaataaccatcatcctcttcatcac 235  Q
    |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  10229716 tcaaactctggcgacttcgcatccatcaccaaaaacttagattctcccttcttctcatcatgcacataactcactaaataaccatcatcctcttcctcac 10229815  T
Q  236 catcctccctcgccacgaaaaacggctcaccaccataacaatcctctccatacaacctacacccaacttcctcccctttcaacacatctatcttcaccac 335  Q
    || | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  10229816 caccttccatcgccacgaaaaacggctcaccaccataacaaccctctccatacaacctacatccaacttcctcccctttcaacacatcaatcttcaccac 10229915  T
Q  336 gccagaaatcttcggcattggattcccaattgccgcataaacaaacctattcttcttccccatataatcaccatttatcaccgcgaaatccaggtttcgc 435  Q
     || |||| ||| ||||||||||||||||| || ||||||||||||||| |||||||||||| | |||||   |||||||| || ||||| || ||||      
T  10229916 ccccgaaaactttggcattggattcccaatcgctgcataaacaaacctactcttcttccccaaaaaatcattgtttatcactgccaaatcaagatttctt 10230015  T
Q  436 gccgataatggttgtcttgatact 459  Q
    || |||||||||||||||| ||||    
T  10230016 gctgataatggttgtcttgttact 10230039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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