View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14031_high_2 (Length: 768)

Name: NF14031_high_2
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14031_high_2
NF14031_high_2
[»] chr4 (1 HSPs)
chr4 (14-750)||(22774201-22774936)


Alignment Details
Target: chr4 (Bit Score: 672; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 14 - 750
Target Start/End: Complemental strand, 22774936 - 22774201
Alignment:
Q  14 cacagaacacaaattgaacttgaacaattctcattgttcatgttatcacaagctacagttctatgtaattgtaaactcaaaaattgagactaaattgcat 113  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22774936 cacagaacacaaattgaacttgaacaattctcattgttcatattatcacaagctacagttctatgtaattgtaaactcaaaaattgagactaaattgcat 22774837  T
Q  114 agtttgttaatctaatgtagctgtatttgcatgagaaaaattccacagtacacaagctgaagctgaacaatgtcattgttcataatgtcacaagatacaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22774836 agtttgttaatctaatgtagctgtatttgcatgagaaaaattccacagaacacaaactgaagctgaacaatgtcattgttcataatgtcacaagatacaa 22774737  T
Q  214 ttgtaaagtcaacaaatgagactgtattacaattttttgtaatacattctatgtgagaaattcattattcttcctccaatgaaatgataatttccatagt 313  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||| ||    
T  22774736 ttgtaaagtcaacaaatgagactgtattacaattttttgtaaaacattctatgtgggacattcattattcttcctccaatgaaatgataatttccat-gt 22774638  T
Q  314 ttcattttaacaaagcacaaattcatatgaaatatctattctatgtcatctaatgagtgtccagaaagagaattggcacnnnnnnncttcaatccttttg 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||  |||    
T  22774637 ttcattttaacaaagcacaaattcatatgaaatatctattctatgtcatctaatgagtgtccagaaagagaattggcacaaaaaaacttcaatcccgttg 22774538  T
Q  414 ttcctttttaccaaagaaaacggttcttcaattaggcgaactcgatggaggcaagtacatttcatcctcacctgaaagatcttcatgaattgaaggcata 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22774537 ttcctttttaccaaagaaaacggttcttcaattaggcgaactcgatggaggcaagtacatttcatcctcacctgaaagatcttcatgaattgaaggcata 22774438  T
Q  514 ggagacgatgcagcaacagcgagtatggtaatatcaaatcgagcattatcgtctgaaaccggtgtatccatctgtcgtatagttgttatcctaccatcct 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22774437 ggagacgatgcagcaacagcgagtatggtaatatcaaatcgagcattatcgtctgaaaccggtgtatccatctgtcgtatagttgttatcctaccatcct 22774338  T
Q  614 tgatcttcacatccactgttttcaaaatatcacaagatttcatcaacaaattgaagttaatcaaaagatcattacgtcataaagattttaacaaaaaata 713  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22774337 tgatcttcacatccactgttttcaaaatatcacaagatttcatcaacaaattgaagttaatcaaaagatcattacgtcataaagattttaacaaaaaata 22774238  T
Q  714 tcacaaattgaagttaagtatattcaattgcaaagaa 750  Q
    ||||||||||||||||| |||||||||||||||||||    
T  22774237 tcacaaattgaagttaattatattcaattgcaaagaa 22774201  T

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