View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_high_20 (Length: 430)
Name: NF14031_high_20
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 34524328 - 34523947
Alignment:
| Q |
18 |
ttaatgatgctataaataatattttctctaataaagtggcaatcagtgacactccaacttccaatttcaccttgtgctttcgaagttccgaagtagtaat |
117 |
Q |
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| T |
34524328 |
ttaatgatgctataaataatattttctctaataaagtggcaatcagtgacactccaacttccaatttcaccttgtgctttcgaagttccgaagtagtagt |
34524229 |
T |
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| Q |
118 |
tgtgttgaaaaattcgtgagtttgtacatcatcgactgcatcaccatctaagttggctgaatatggaatgtcatatcacaaatatgttttatcttaacgt |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34524228 |
tgtgttgcaaaattcgtgagtttgtacatcatcgactgcatcaccatctaagttggctgaatatggaatgtcatatcacaaatatgttttatcttaacgt |
34524129 |
T |
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| Q |
218 |
ggaagtaaatcctacatacaatcgttgatcatgtcaaaattcaatttatcagatgtcaatgtttagtacattaagatttaagatgcatctggtggaggca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34524128 |
ggaagtaaatcctacatacaatcgttgatcatgtcaaaattcaatttatcagatatcaatgtttagtacattaagatttaagatgcatctggtggaggca |
34524029 |
T |
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| Q |
318 |
ttgtaggataataagataaactcttgccacaactctgtaacaacatcacaatatctgctagaaagtgtctctatttataaaa |
399 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34524028 |
ttgtaggataataagataaactcttgccacaactcggtaacaacatcacaatatctgctagaaagtgtctctatttataaaa |
34523947 |
T |
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