View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_high_24 (Length: 396)
Name: NF14031_high_24
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 44180186 - 44179801
Alignment:
| Q |
1 |
tgtaggaggttgaaagctcaggtatgatattatatgtatatcttagtggacaaatgattttaatcccaacaataaaatcaaaggg-----tatgtgtaac |
95 |
Q |
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| T |
44180186 |
tgtaggaggttgaaagctcaggtatgatattatatgtatatcttagtggacaaatgattttaatcccaacaataaaatcaaagggcgatatatgtgtaac |
44180087 |
T |
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| Q |
96 |
nnnnnnn---gggcgatacatgtgcaattttggattagaatcatgactctttcctaagaatattgacgaatgaaaacactattttaagttacgtagcaag |
192 |
Q |
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| T |
44180086 |
caaaaaaaaagggtgatacatgtgcaattttgaattagaatcatgactcttccctgagaatattgacgaatgaaaacactattttaagttatgtagcaag |
44179987 |
T |
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| Q |
193 |
cgacatcggaactccaatatttttagatgatgcaatctataattgttgtctgtctcctttaagacatcttgtggatttgacccgtaaaatattgacggaa |
292 |
Q |
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|||||||||||||||||| |||||||||||| || ||||||||| |||| |||||||||| |||||| |||| ||||||||||||||||||||||||||| |
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| T |
44179986 |
cgacatcggaactccaatgtttttagatgatacagtctataattattgtttgtctcctttcagacattttgtagatttgacccgtaaaatattgacggaa |
44179887 |
T |
|
| Q |
293 |
taatggtgatacataagtaattttggaggaatcataaatcttctctaaaatattggcgaatgaaaacactatttaaagtagcaaac |
378 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44179886 |
taatggtgatacataagcaattttgaaggaatcataaatcttctctaaaatattggcgaatgaaaacactatttaaagtagcaaac |
44179801 |
T |
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