View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14031_high_30 (Length: 339)

Name: NF14031_high_30
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14031_high_30
NF14031_high_30
[»] chr4 (1 HSPs)
chr4 (17-323)||(44000271-44000577)
[»] chr3 (3 HSPs)
chr3 (20-172)||(5572519-5572672)
chr3 (216-323)||(39293904-39294010)
chr3 (171-211)||(44301685-44301724)
[»] chr2 (2 HSPs)
chr2 (216-323)||(8357716-8357822)
chr2 (169-201)||(30544415-30544447)
[»] chr7 (1 HSPs)
chr7 (170-211)||(34947630-34947670)
[»] chr5 (1 HSPs)
chr5 (171-200)||(32440274-32440303)
[»] chr1 (1 HSPs)
chr1 (168-201)||(49223939-49223972)
[»] chr6 (1 HSPs)
chr6 (171-211)||(17829062-17829101)


Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 44000577 - 44000271
Alignment:
Q  17 aatctgaagggttgataaacacaaacagatttagcactgctgcagctgttcaggaattgattactccacaagtttcaataaattatacacagcatcttat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44000577 aatctgaagggttgataaacacaaacagatttagcactgctgcagctgttcaggaattgattactccacaagtttcaataaattatacacagcatcttat 44000478  T
Q  117 aaatggaaagtttgtggatgctgcatcaggtaatgtttaaagatcgttgcttgttactccctccgtctcaaaataatagtcgttttaaggtttgtctcga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44000477 aaatggaaagtttgtggatgctgcatcaggtaatgtttaaagatcgttgcttgttactccctccgtctcaaaataatagtcgttttaaggtttgtctcga 44000378  T
Q  217 aaaatcatttattgagtggaagtgagaacaagttaggctcttagattaaacacggagtttcttttgattccagggaaaacatttccaacacttgatccac 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44000377 aaaatcatttattgagtggaagtgagaacaagttaggctcttagattaaacacggagtttcttttgattccagggaaaacatttccaacacttgatccac 44000278  T
Q  317 gcacagg 323  Q
    |||||||    
T  44000277 gcacagg 44000271  T

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Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 5572519 - 5572672
Alignment:
Q  20 ctgaagggttgataaacacaaacagatttagcactgctgcagctgttcaggaattgattactccacaagtttcaataaattatacacagcatcttataaa 119  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||||| || |||||||| |||||||||||    
T  5572519 ctgaagggttgataaacacaaacagatttagcaatgctacagctgttgaggaattgattactccataagtttcaatgaactatacacaacatcttataaa 5572618  T
Q  120 tggaaagtttgtggatgctgcatcaggtaatgtttaaagatcg-ttgcttgtta 172  Q
    |||||| |||||||||| ||||||||||||||| ||||||| | ||||||||||    
T  5572619 tggaaaatttgtggatgatgcatcaggtaatgtataaagattgtttgcttgtta 5572672  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 216 - 323
Target Start/End: Original strand, 39293904 - 39294010
Alignment:
Q  216 aaaaatcatttattgagtggaagtgagaacaagttaggctcttagattaaacacggagtttcttttgattccagggaaaacatttccaacacttgatcca 315  Q
    ||||||||| |||| | ||||||||||||||||||| |||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||    
T  39293904 aaaaatcatgtattaaatggaagtgagaacaagttacgctcttagattaaacatggagtt-cttttgatttcagggaaaacatttccaacacttgatcca 39294002  T
Q  316 cgcacagg 323  Q
    ||||||||    
T  39294003 cgcacagg 39294010  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 44301724 - 44301685
Alignment:
Q  171 tactccctccgtctcaaaataatagtcgttttaaggtttgt 211  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  44301724 tactccctccgtctcaaaataatggtcg-tttaaggtttgt 44301685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 216 - 323
Target Start/End: Complemental strand, 8357822 - 8357716
Alignment:
Q  216 aaaaatcatttattgagtggaagtgagaacaagttaggctcttagattaaacacggagtttcttttgattccagggaaaacatttccaacacttgatcca 315  Q
    ||||||||| |||||| ||||||||||||||| ||| |||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||    
T  8357822 aaaaatcatgtattgaatggaagtgagaacaaattacgctcttagattaaacatggagttt-ttttgatttcagggaaaacatttccaacacttgatcca 8357724  T
Q  316 cgcacagg 323  Q
    ||||||||    
T  8357723 cgcacagg 8357716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 30544447 - 30544415
Alignment:
Q  169 gttactccctccgtctcaaaataatagtcgttt 201  Q
    ||||||||||||||||| |||||||||||||||    
T  30544447 gttactccctccgtctctaaataatagtcgttt 30544415  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 34947670 - 34947630
Alignment:
Q  170 ttactccctccgtctcaaaataatagtcgttttaaggtttgt 211  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  34947670 ttactccctccgtctctaaataatagtcg-tttaaggtttgt 34947630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 32440303 - 32440274
Alignment:
Q  171 tactccctccgtctcaaaataatagtcgtt 200  Q
    ||||||||||||||||||||||||||||||    
T  32440303 tactccctccgtctcaaaataatagtcgtt 32440274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 49223939 - 49223972
Alignment:
Q  168 tgttactccctccgtctcaaaataatagtcgttt 201  Q
    |||||||||||||||||| |||||||||||||||    
T  49223939 tgttactccctccgtctctaaataatagtcgttt 49223972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 17829101 - 17829062
Alignment:
Q  171 tactccctccgtctcaaaataatagtcgttttaaggtttgt 211  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  17829101 tactctctccgtctcaaaataatagtc-ttttaaggtttgt 17829062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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