View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_high_32 (Length: 330)
Name: NF14031_high_32
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 5 - 321
Target Start/End: Complemental strand, 5591839 - 5591523
Alignment:
| Q |
5 |
atatgctgttacaataatatatggattgtttctttttcctaccgacatttgaagcaatcttttcatatcaaacagcaatattgtaaactggaataaatgt |
104 |
Q |
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| T |
5591839 |
atatgctgttacaataatatatggattgtttctttttcctaccgacatttgaagcaatcttttcatatcaaacagcaatattgtaaactggaataaatgt |
5591740 |
T |
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| Q |
105 |
aacaagtttaattggttataccaccttaagcttgatttgatttgtgttaaataaattattcgataactatatataagtgtgtatctgatgatattatccc |
204 |
Q |
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| T |
5591739 |
aacaagtttaattggttataccaccttaagcttgatttgatttgtgttaaataaattattcgataactatatataagtgtgtatctgatgatattatccc |
5591640 |
T |
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| Q |
205 |
atatatttgtacagtaaataatctacatgaagtgtgataaggacgaaggtaattatttgattaggaactgaatgattaactaatgattgggtttcattaa |
304 |
Q |
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| T |
5591639 |
atatatttatacagtaaataatctacattaagtgtgataaggacgaaggtaattatttgattaggaactgaatgattaactaatgattgggtttcattaa |
5591540 |
T |
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| Q |
305 |
tttcaagcatctgtctg |
321 |
Q |
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| T |
5591539 |
tttcaagcatctgtctg |
5591523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 5585596 - 5585502
Alignment:
| Q |
5 |
atatgctgttacaataatatatggattgtttctttttcctaccgacatttgaagcaatcttttcatatcaaacagcaatattgtaaactggaataa |
100 |
Q |
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| T |
5585596 |
atatgctgttacaatattgtatggattgtttc-ttttcctacctacatttgaaacaatcttttcttatcaaatagcattattgttaactgaaataa |
5585502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 5581608 - 5581493
Alignment:
| Q |
38 |
ttttcctaccgacatttgaagcaatcttttcatatcaaacagcaatattgtaaactggaataaa-tgtaacaagtttaattggttataccaccttaagct |
136 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||| |||| |||||| ||||||| | || ||| ||||||||| | | ||||||| | |
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| T |
5581608 |
ttttcctacctacatttgaagcaatcttttcatatcaaatagcattattataaactagaataaaatcaaattagtgtaattggttctctcgccttaagtt |
5581509 |
T |
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| Q |
137 |
tgatttgatttgtgtt |
152 |
Q |
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| T |
5581508 |
tgatttgatttgtgtt |
5581493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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