View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14031_high_34 (Length: 316)

Name: NF14031_high_34
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14031_high_34
NF14031_high_34
[»] chr6 (42 HSPs)
chr6 (24-301)||(27604929-27605213)
chr6 (24-236)||(28780889-28781102)
chr6 (24-225)||(27228995-27229195)
chr6 (24-225)||(28786039-28786241)
chr6 (24-236)||(27725069-27725281)
chr6 (26-225)||(26802199-26802403)
chr6 (24-236)||(27698718-27698929)
chr6 (24-203)||(27611226-27611406)
chr6 (24-236)||(27718603-27718816)
chr6 (26-225)||(26655750-26655950)
chr6 (26-225)||(26761721-26761921)
chr6 (24-201)||(28792184-28792362)
chr6 (26-241)||(27338291-27338500)
chr6 (26-241)||(27399031-27399240)
chr6 (24-196)||(31284078-31284251)
chr6 (26-218)||(27427829-27428020)
chr6 (24-224)||(27678716-27678909)
chr6 (24-158)||(26622805-26622939)
chr6 (24-158)||(26728783-26728917)
chr6 (25-223)||(26823609-26823802)
chr6 (30-224)||(27706632-27706819)
chr6 (24-155)||(27593244-27593375)
chr6 (24-157)||(26861446-26861579)
chr6 (27-155)||(27677841-27677969)
chr6 (24-127)||(26884023-26884126)
chr6 (24-106)||(27531421-27531503)
chr6 (24-158)||(26646302-26646442)
chr6 (24-158)||(26752270-26752410)
chr6 (128-222)||(26055724-26055818)
chr6 (129-222)||(25481540-25481633)
chr6 (129-222)||(25538338-25538431)
chr6 (129-222)||(26048643-26048736)
chr6 (129-222)||(26069812-26069905)
chr6 (129-222)||(26075694-26075787)
chr6 (129-222)||(26142663-26142756)
chr6 (27-153)||(28098596-28098725)
chr6 (129-238)||(25579499-25579610)
chr6 (127-207)||(27531503-27531582)
chr6 (34-125)||(28325343-28325434)
chr6 (35-92)||(28226845-28226902)
chr6 (34-89)||(28242702-28242757)
chr6 (37-131)||(26342171-26342265)
[»] scaffold0277 (2 HSPs)
scaffold0277 (24-236)||(13856-14069)
scaffold0277 (24-225)||(4895-5102)
[»] scaffold1254 (1 HSPs)
scaffold1254 (24-241)||(141-352)
[»] scaffold0419 (1 HSPs)
scaffold0419 (24-241)||(7277-7488)
[»] scaffold0349 (3 HSPs)
scaffold0349 (24-236)||(3646-3858)
scaffold0349 (24-236)||(14579-14790)
scaffold0349 (61-236)||(8062-8238)
[»] chr4 (8 HSPs)
chr4 (24-235)||(18699611-18699821)
chr4 (24-235)||(18655688-18655898)
chr4 (24-225)||(18679778-18679978)
chr4 (24-225)||(18731715-18731915)
chr4 (26-218)||(17989263-17989454)
chr4 (26-218)||(18073535-18073726)
chr4 (24-160)||(18724296-18724432)
chr4 (37-86)||(5091191-5091240)
[»] scaffold0003 (1 HSPs)
scaffold0003 (26-218)||(59343-59534)
[»] chr1 (3 HSPs)
chr1 (31-183)||(28164580-28164733)
chr1 (31-180)||(28127898-28128042)
chr1 (24-160)||(268568-268704)
[»] chr8 (1 HSPs)
chr8 (24-153)||(29273994-29274123)
[»] scaffold0038 (3 HSPs)
scaffold0038 (34-125)||(116658-116749)
scaffold0038 (35-92)||(27343-27400)
scaffold0038 (34-89)||(42864-42919)
[»] chr2 (1 HSPs)
chr2 (37-83)||(3279592-3279638)
[»] scaffold0019 (1 HSPs)
scaffold0019 (35-113)||(58517-58595)


Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 42)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 24 - 301
Target Start/End: Original strand, 27604929 - 27605213
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27604929 agtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagag 27605028  T
Q  124 gaagagga------aggtaattgcatagccatgagaattgagagaaattggatgaaaa-agagtttgagaatgcagaatatgaatgagtaagtttttgtg 216  Q
    || |||||      |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27605029 gatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtg 27605128  T
Q  217 gtctgtgatttggagtctttaatataacatggagaaattgttcttaagaaatggttatttttgtcataagtttttgcggtctgtg 301  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| |||||||||||||||||||||||    
T  27605129 gtctgtgatttggagtctttaatataacaaggagaaattgttcttaataaatagttattttggtcataagtttttgcggtctgtg 27605213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 28781102 - 28780889
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||    
T  28781102 agtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatgcagaggaaaatgaagag 28781003  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatga-aaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  28781002 gaagaggaaggtaattgcatagccatgataattgagagaaattggatgaaaaaagagtttgagaattcagaatatgaatgagtttgtttttgtggtctgt 28780903  T
Q  223 gatttggagtcttt 236  Q
    |||||  |||||||    
T  28780902 gatttaaagtcttt 28780889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 27229195 - 27228995
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||    
T  27229195 agtaagagccttgtagagattgccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatccaaaggaaaatgaagag 27229096  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtg 223  Q
    |||||||||||| |||| |||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  27229095 gaagaggaaggtgattgtatagccatgagacttgagagaaattggatg-aaaagagttttagaatgcagaatatgaatgagtatgtttttgtggtatgtg 27228997  T
Q  224 at 225  Q
    ||    
T  27228996 at 27228995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 28786241 - 28786039
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||||||||||||||| || ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  28786241 agtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagag 28786142  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatga-aaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
    || ||||||||| |||| |||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  28786141 gatgaggaaggtgattgtatagccataagaattgagagaaattggatgaaaaaagagtttgagaattcagaatatgaatgagtttgtttttgtggtctgt 28786042  T
Q  223 gat 225  Q
    |||    
T  28786041 gat 28786039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 27725069 - 27725281
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||||||||||||||| || ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  27725069 agtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaagag 27725168  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatg-aaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
    || ||||||||| |||| |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  27725169 gatgaggaaggtgattgtatagccatgacaattgagagaaataggatgaaaaaagagtttgagaatgcagaatatgaatg-gtaaatttttgtggtctgt 27725267  T
Q  223 gatttggagtcttt 236  Q
     || || |||||||    
T  27725268 tatgtgaagtcttt 27725281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 26802403 - 26802199
Alignment:
Q  26 taagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagagga 125  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| |||||||||    
T  26802403 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 26802304  T
Q  126 agaggaaggtaattgcatagccatgagaattgagagaaattggatga-----aaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtct 220  Q
     ||||||||  | ||||||||||||| ||||| ||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26802303 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgaaaaaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtct 26802204  T
Q  221 gtgat 225  Q
    |||||    
T  26802203 gtgat 26802199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 27698718 - 27698929
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||||||||||||||| || ||||||||||  ||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| ||||| |    
T  27698718 agtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaagtg 27698817  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtg 223  Q
    || ||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||    
T  27698818 gatgaggaaggtgattgtatagccatgagaattgagagaaataggatgaaaaagagtttgagaatgcagaatatgaatgagtaa-attttgtgttctgtg 27698916  T
Q  224 atttggagtcttt 236  Q
    || || |||||||    
T  27698917 atgtgaagtcttt 27698929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 24 - 203
Target Start/End: Original strand, 27611226 - 27611406
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||||||||||||||| || ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||     
T  27611226 agtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaa 27611325  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatg-aaaaagagtttgagaatgcagaatatgaatga 203  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27611326 gaagaggaagctaattgcatagccatgaaaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatga 27611406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 27718603 - 27718816
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||||||||||||||| || ||||||| ||  ||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| | |||||||    
T  27718603 agtaagagccttgtagagatttccggtaaaactgtgccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaagag 27718702  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatg-aaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
    || ||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| | |||||||| |||||    
T  27718703 gatgaggaaggtgattgtatagccatgagaattgagagaaataggatgaaaaaagagtttgagaatgcagaatatgaatgagtgaatttttgtgttctgt 27718802  T
Q  223 gatttggagtcttt 236  Q
    ||| || |||||||    
T  27718803 gatgtgaagtcttt 27718816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 26655950 - 26655750
Alignment:
Q  26 taagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagagga 125  Q
    |||||||||||||||||||||| ||||||||||  || |||||| ||||||||||||| ||||||||||||||  | ||  ||||||||| |||||||||    
T  26655950 taagagccttgtagagattgccggtaaaaccgtgccgggtgtcaatgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagagga 26655851  T
Q  126 agaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaa-gagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtga 224  Q
     ||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26655850 tgaggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtga 26655751  T
Q  225 t 225  Q
    |    
T  26655750 t 26655750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 26761921 - 26761721
Alignment:
Q  26 taagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagagga 125  Q
    |||||||||||||||||||||| ||||||||||  || |||||| ||||||||||||| ||||||||||||||  | ||  ||||||||| |||||||||    
T  26761921 taagagccttgtagagattgccggtaaaaccgtgccgggtgtcaatgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagagga 26761822  T
Q  126 agaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaa-gagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtga 224  Q
     ||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26761821 tgaggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtga 26761722  T
Q  225 t 225  Q
    |    
T  26761721 t 26761721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 24 - 201
Target Start/End: Complemental strand, 28792362 - 28792184
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||||||||||||||| || ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  28792362 agtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagag 28792263  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatga-aaaagagtttgagaatgcagaatatgaat 201  Q
    || ||||||||| |||| |||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  28792262 gatgaggaaggtgattgtatagccataagaattgagagaaattggatgaaaaaagagtttgagaattcagaatatgaat 28792184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 26 - 241
Target Start/End: Original strand, 27338291 - 27338500
Alignment:
Q  26 taagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagagga 125  Q
    |||||||||||||||||||||| |||||||||||  |||||||| || |||||||||| |||||||| |||||  ||||  || ||||||||||||||||    
T  27338291 taagagccttgtagagattgccggtaaaaccgtaaagagtgtcaatgtccctaaaactgaggaacacatggtatttgaacccagaggaaattgaagagga 27338390  T
Q  126 agaggaaggtaattgcatagccatgagaattgagagaaattggatg-aaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtga 224  Q
    ||||||| || |||||||||||||||||||||||||||||  |||| ||||| ||||||       ||||||||||||||||||||||||||||||||||    
T  27338391 agaggaaagtgattgcatagccatgagaattgagagaaataagatgaaaaaaaagtttg-------agaatatgaatgagtaagtttttgtggtctgtga 27338483  T
Q  225 tttggagtctttaatat 241  Q
    | |||||||||||||||    
T  27338484 tgtggagtctttaatat 27338500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 26 - 241
Target Start/End: Original strand, 27399031 - 27399240
Alignment:
Q  26 taagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagagga 125  Q
    |||||||||||||||||||||| |||||||||||  |||||||| || |||||||||| |||||||| |||||  ||||  || ||||||||||||||||    
T  27399031 taagagccttgtagagattgccggtaaaaccgtaaagagtgtcaatgtccctaaaactgaggaacacatggtatttgaacccagaggaaattgaagagga 27399130  T
Q  126 agaggaaggtaattgcatagccatgagaattgagagaaattggatg-aaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtga 224  Q
    ||||||| || |||||||||||||||||||||||||||||  |||| ||||| ||||||       ||||||||||||||||||||||||||||||||||    
T  27399131 agaggaaagtgattgcatagccatgagaattgagagaaataagatgaaaaaaaagtttg-------agaatatgaatgagtaagtttttgtggtctgtga 27399223  T
Q  225 tttggagtctttaatat 241  Q
    | |||||||||||||||    
T  27399224 tgtggagtctttaatat 27399240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 24 - 196
Target Start/End: Complemental strand, 31284251 - 31284078
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    |||||||||||||||||||||||| || ||||| || ||||||||| | ||||| ||||||||||| ||||||||  ||||| |||||||||||||||||    
T  31284251 agtaagagccttgtagagattgccggtgaaaccataccgagtgtcacttcccctgaaactaaggaatacttggtatttgaatacataggaaattgaagag 31284152  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatgaa-aaagagtttgagaatgcagaata 196  Q
    |||||||||| | ||||||||||||||||| |||||||||  |||||||| ||||| |||||||||||||||||    
T  31284151 gaagaggaagatgattgcatagccatgagatttgagagaatatggatgaagaaagaatttgagaatgcagaata 31284078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 27427829 - 27428020
Alignment:
Q  26 taagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagagga 125  Q
    ||||||||||  |||||||||| || |||||||| |||||||| |||||| || || | |||||||| | |||| ||||||||||||||| |||||||||    
T  27427829 taagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcataggaaaatgaagagga 27427928  T
Q  126 agaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggt 218  Q
    | || ||||||||||||| |||||||||||||||||||||  |||| | |||||||||||||||||||||||||||||| | |||||||||||    
T  27427929 atagaaaggtaattgcatggccatgagaattgagagaaataagatg-agaagagtttgagaatgcagaatatgaatgaggatgtttttgtggt 27428020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 224
Target Start/End: Complemental strand, 27678909 - 27678716
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||||||||||||||| || || |||||||| ||||||||| | || || ||||| ||||| ||||||||  || |  ||||||||||||||| |    
T  27678909 agtaagagccttgtagagattcccggtgaaaccgtaccgagtgtcacttcctctgaaactgaggaatacttggtatttgtactcataggaaattgaagtg 27678810  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatg-aaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
    |||||||||||| ||||||||||||||||| || ||||||||| |||| ||||||||||||       |||||||||||||| |||||||||||||||||    
T  27678809 gaagaggaaggtgattgcatagccatgagattttagagaaattagatgaaaaaagagtttg-------agaatatgaatgag-aagtttttgtggtctgt 27678718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 26622939 - 26622805
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||||||||||||||| ||||| |||||||| ||||||||| |||| || ||||| ||||||||||||||  |||||  ||||||||||||||||    
T  26622939 agtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacacttggtatttgaattgataggaaattgaagag 26622840  T
Q  124 gaagaggaaggtaattgcatagccatgagaattga 158  Q
    |||||||| ||| ||||||||||||||| ||||||    
T  26622839 gaagaggatggtgattgcatagccatgataattga 26622805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 26728917 - 26728783
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||||||||||||||| ||||| |||||||| ||||||||| |||| || ||||| ||||||||||||||  |||||  ||||||||||||||||    
T  26728917 agtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacacttggtatttgaattgataggaaattgaagag 26728818  T
Q  124 gaagaggaaggtaattgcatagccatgagaattga 158  Q
    |||||||| ||| ||||||||||||||| ||||||    
T  26728817 gaagaggatggtgattgcatagccatgataattga 26728783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 26823802 - 26823609
Alignment:
Q  25 gtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagagg 124  Q
    ||||||||||||||||||||||| |||||  | || |||||||||| ||| |||||||| || |||||||||||  ||||  |||| |||| ||||||||    
T  26823802 gtaagagccttgtagagattgccggtaaattcataccgagtgtcagcgcctctaaaactgagaaacacttggtatttgaaatcatatgaaactgaagagg 26823703  T
Q  125 aagaggaaggtaattgcatagccatgagaattgagagaaattggatgaa-aaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtg 223  Q
    |||  ||       ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||  |||||| ||||    
T  26823702 aagttgac------tgcatagccatgagaattgagagaaattggacgaagaaagagtttgagaatgcagaatatgaatgagtatgttactgtggtgtgtg 26823609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 224
Target Start/End: Original strand, 27706632 - 27706819
Alignment:
Q  30 agccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagaggaagag 129  Q
    |||||||||||||||||| || |||||||| |||||||||   || || ||||| ||||| ||||||||  || |  ||||||||||||||| |||||||    
T  27706632 agccttgtagagattgcctgtgaaaccgtaccgagtgtcacctcctctgaaactgaggaatacttggtatttgtactcataggaaattgaagtggaagag 27706731  T
Q  130 gaaggtaattgcatagccatgagaattgagagaaattggatg-aaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtga 224  Q
     ||||| ||||||||||||||||| || ||||||||| |||| ||||||||||||       |||||||||||||| |||||||||||||||||||    
T  27706732 aaaggtgattgcatagccatgagattttagagaaattagatgaaaaaagagtttg-------agaatatgaatgag-aagtttttgtggtctgtga 27706819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 27593244 - 27593375
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    |||||||||||||||||||||||| || |||||||| ||||||||| | || || ||||| ||||| ||||||||  || |  ||||||||||||||| |    
T  27593244 agtaagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttcctctgaaactgaggaatacttggtatttgtaatcataggaaattgaagtg 27593343  T
Q  124 gaagaggaaggtaattgcatagccatgagaat 155  Q
    |||||||||||| |||||||||||||||||||    
T  27593344 gaagaggaaggtgattgcatagccatgagaat 27593375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 24 - 157
Target Start/End: Complemental strand, 26861579 - 26861446
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||||||||||||||| || |||||||| || ||||||||| | || || ||||| ||||| || |||||  ||||| |||||||||| ||||||    
T  26861579 agtaagagccttgtagagattaccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacctggtatttgaatccataggaaatggaagag 26861480  T
Q  124 gaagaggaaggtaattgcatagccatgagaattg 157  Q
    |||||| ||||| ||||||||||||| |||||||    
T  26861479 gaagagcaaggtgattgcatagccatcagaattg 26861446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 27677841 - 27677969
Alignment:
Q  27 aagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagaggaa 126  Q
    ||||||||||||||||||||| || |||||||| ||||||||| | || || ||| | ||||| ||||||||  || |  ||||||||||||||| ||||    
T  27677841 aagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttcctctgaaattgaggaatacttggtatttgtactcataggaaattgaagtggaa 27677940  T
Q  127 gaggaaggtaattgcatagccatgagaat 155  Q
    ||||||||| |||||||||||||||||||    
T  27677941 gaggaaggtgattgcatagccatgagaat 27677969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 26884126 - 26884023
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||||||||||||||| ||||| ||||| || ||||||||| | || || ||||| ||||||||||||||||||||| ||||||||| |||||||    
T  26884126 agtaagagccttgtagagatttccagtgaaaccataccgagtgtcacttcctctgaaactgaggaacacttggtaagtgaatccataggaaaatgaagag 26884027  T
Q  124 gaag 127  Q
    ||||    
T  26884026 gaag 26884023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 27531421 - 27531503
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatg 106  Q
    ||||||||||||||||||||| || ||||||||||  |||||||| | |||||||||||| ||||||||||||||||||||||    
T  27531421 agtaagagccttgtagagatttccggtaaaaccgtggcgagtgtccgcgcccctaaaactgaggaacacttggtaagtgaatg 27531503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 26646442 - 26646302
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||||||||||||||  |||||||||||||  ||||||||| ||||||| ||  | ||||| || ||||| |||||| | ||||||||| |||||    
T  26646442 agtaagagccttgtagagatgtccagtaaaaccgtcacgagtgtcactgcccctgaagttgaggaagacctggtaggtgaatccgtaggaaattaaagag 26646343  T
Q  124 gaaga------ggaaggtaattgcatagccatgagaattga 158  Q
    |||||      ||||||  ||||||||||||||||||||||    
T  26646342 gaagaggaataggaaggagattgcatagccatgagaattga 26646302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 26752410 - 26752270
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||||||||||||||  |||||||||||||  ||||||||| ||||||| ||  | ||||| || ||||| |||||| | ||||||||| |||||    
T  26752410 agtaagagccttgtagagatgtccagtaaaaccgtcacgagtgtcactgcccctgaagttgaggaagacctggtaggtgaatccgtaggaaattaaagag 26752311  T
Q  124 gaaga------ggaaggtaattgcatagccatgagaattga 158  Q
    |||||      ||||||  ||||||||||||||||||||||    
T  26752310 gaagaggaataggaaggagattgcatagccatgagaattga 26752270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 26055818 - 26055724
Alignment:
Q  128 aggaaggtaattgcatagccatgagaattgagagaaattggatga-aaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
    |||||||| |||||||||||||||||||||| ||||  ||||||| |||||| ||||| |||| ||||||||||||||||| ||| ||||||||||    
T  26055818 aggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 26055724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 25481633 - 25481540
Alignment:
Q  129 ggaaggtaattgcatagccatgagaattgagagaaattggatga-aaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
    ||||||| |||||||||||||||||||||| |||| |||||||| |||| | ||||| |||| ||||||||||||||||| ||| ||||||||||    
T  25481633 ggaaggtgattgcatagccatgagaattgaaagaatttggatgaaaaaaaactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 25481540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 25538431 - 25538338
Alignment:
Q  129 ggaaggtaattgcatagccatgagaattgagagaaattggatga-aaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
    ||||||| |||||||||||||||||||||| |||| |||||||| |||||| ||||| |||| ||||||||||||| ||| ||| ||||||||||    
T  25538431 ggaaggtgattgcatagccatgagaattgaaagaatttggatgaaaaaagactttgaaaatggagaatatgaatgattaa-tttgtgtggtctgt 25538338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 26048736 - 26048643
Alignment:
Q  129 ggaaggtaattgcatagccatgagaattgagagaaattggatga-aaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
    ||||||| |||||||||||||||||||||| ||||  ||||||| |||||| ||||| |||| ||||||||||||||||| ||| ||||||||||    
T  26048736 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 26048643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 26069905 - 26069812
Alignment:
Q  129 ggaaggtaattgcatagccatgagaattgagagaaattggatga-aaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
    ||||||| |||||||||||||||||||||| ||||  ||||||| |||||| ||||| |||| ||||||||||||||||| ||| ||||||||||    
T  26069905 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 26069812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 26075787 - 26075694
Alignment:
Q  129 ggaaggtaattgcatagccatgagaattgagagaaattggatga-aaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
    ||||||| |||||||||||||||||||||| ||||  ||||||| |||||| ||||| |||| ||||||||||||||||| ||| ||||||||||    
T  26075787 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 26075694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 26142756 - 26142663
Alignment:
Q  129 ggaaggtaattgcatagccatgagaattgagagaaattggatga-aaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
    ||||||| |||||||||||||||||||||| ||||  ||||||| |||||| ||||| |||| ||||||||||||||||| ||| ||||||||||    
T  26142756 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 26142663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 28098596 - 28098725
Alignment:
Q  27 aagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagaggaa 126  Q
    |||||| ||||||||||| ||||||||||| || |||||||| |||||||||||| |||| ||||| |  || |||||| |||| || | ||||||| ||    
T  28098596 aagagctttgtagagatttccagtaaaaccataccgagtgtcggtgcccctaaaattaagaaacacgtcataggtgaatccataagagaatgaagagaaa 28098695  T
Q  127 gaggaaggtaatt---gcatagccatgaga 153  Q
    ||||||| | |||   ||||||||||||||    
T  28098696 gaggaagatgattggagcatagccatgaga 28098725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 238
Target Start/End: Complemental strand, 25579610 - 25579499
Alignment:
Q  129 ggaaggtaattgcatagccatgagaattgagagaaattggatg---aaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtgat 225  Q
    ||||||| |||||||||||||||||||||| |||| |||||||   ||||| | ||||| |||| ||||||||||||||||| | | ||||||||||||     
T  25579610 ggaaggtgattgcatagccatgagaattgaaagaatttggatgaataaaaaaactttgaaaatggagaatatgaatgagtaa-tgtgtgtggtctgtgag 25579512  T
Q  226 ttggagtctttaa 238  Q
     |||| |||||||    
T  25579511 gtggattctttaa 25579499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 27531503 - 27531582
Alignment:
Q  127 gaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaagagtttgagaatgcagaatatgaatgagtaa 207  Q
    ||||||||| ||||| |||||||||||| ||||||||| |  |||| || ||||||||||||||||||| |||||||||||    
T  27531503 gaggaaggtgattgcgtagccatgagaactgagagaaactt-atgacaaggagtttgagaatgcagaatgtgaatgagtaa 27531582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 28325434 - 28325343
Alignment:
Q  34 ttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagagga 125  Q
    ||||||||||| ||||||||||| || ||||||||| | || ||||||||||||||||| |  || |||||| |||||||||  ||||||||    
T  28325434 ttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaacacgtcataggtgaatccataggaaaaggaagagga 28325343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 28226902 - 28226845
Alignment:
Q  35 tgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacac 92  Q
    |||||||||| ||||||||||| || ||||||||| | || |||||||||||||||||    
T  28226902 tgtagagatttccagtaaaaccataacgagtgtcaatacctctaaaactaaggaacac 28226845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 28242757 - 28242702
Alignment:
Q  34 ttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaa 89  Q
    ||||||||||| ||||||||||| || ||||||||| | || ||||||||||||||    
T  28242757 ttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaa 28242702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 26342171 - 26342265
Alignment:
Q  37 tagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagaggaagagga 131  Q
    |||| ||||||||||||||| || |||||| || ||||||||||| | |||||||| |  || |||||| |||| || | ||||||| |||||||    
T  26342171 tagatattgccagtaaaaccatagcgagtgccaatgcccctaaaattgaggaacacatcatatgtgaatccatatgagaatgaagagaaagagga 26342265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 13856 - 14069
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||    
T  13856 agtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatgcagaggaaaatgaagag 13955  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatg-aaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  13956 gaagaggaaggtaattgcatagccatgataattgagagaaattggatgaaaaaagagtttgagaattcagaatatgaatgagtttgtttttgtggtctgt 14055  T
Q  223 gatttggagtcttt 236  Q
    |||||  |||||||    
T  14056 gatttaaagtcttt 14069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 4895 - 5102
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||||||||||||||| || ||||||||||  ||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  4895 agtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcaatgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagag 4994  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaa-gagtttgagaatgcagaatatgaat-----gagtaagtttttgtgg 217  Q
    || ||||||||| |||| |||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||     || |||||||||||||    
T  4995 gatgaggaaggtgattgtatagccataagaattgagagaaattggatgaaaaaagagtttgagaattcagaatatgaatttaatgaataagtttttgtgg 5094  T
Q  218 tctgtgat 225  Q
    ||||||||    
T  5095 tctgtgat 5102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 141 - 352
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  141 agtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcatatgaaaatgaagag 240  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatg-aaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
    ||||||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||||       ||||||||||||||||||||||||||||||||    
T  241 gaagagggaggtgattgcatagccatgagaattgagagaaattagatgaaaaaagagtttg-------agaatatgaatgagtaagtttttgtggtctgt 333  T
Q  223 gatttggagtctttaatat 241  Q
    ||| |||||||||||||||    
T  334 gatgtggagtctttaatat 352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 7488 - 7277
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  7488 agtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcatatgaaaatgaagag 7389  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatg-aaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
    ||||||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||||       ||||||||||||||||||||||||||||||||    
T  7388 gaagagggaggtgattgcatagccatgagaattgagagaaattagatgaaaaaagagtttg-------agaatatgaatgagtaagtttttgtggtctgt 7296  T
Q  223 gatttggagtctttaatat 241  Q
    ||| |||||||||||||||    
T  7295 gatgtggagtctttaatat 7277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 3646 - 3858
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||||||||||||||| || ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  3646 agtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaagag 3745  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatg-aaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
    || ||||||||| |||| |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  3746 gatgaggaaggtgattgtatagccatgacaattgagagaaataggatgaaaaaagagtttgagaatgcagaatatgaatg-gtaaatttttgtggtctgt 3844  T
Q  223 gatttggagtcttt 236  Q
     || || |||||||    
T  3845 tatgtgaagtcttt 3858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 14579 - 14790
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||||||||||||||| || ||||||||||  ||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| ||||| |    
T  14579 agtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaagtg 14678  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtg 223  Q
    || ||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||    
T  14679 gatgaggaaggtgattgtatagccatgagaattgagagaaataggatgaaaaagagtttgagaatgcagaatatgaatgagtaa-attttgtgttctgtg 14777  T
Q  224 atttggagtcttt 236  Q
    || || |||||||    
T  14778 atgtgaagtcttt 14790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 61 - 236
Target Start/End: Original strand, 8062 - 8238
Alignment:
Q  61 cgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagaggaagaggaaggtaattgcatagccatgagaattgaga 160  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| | ||||||||| ||||||||| |||| |||||||||||||||||||    
T  8062 cgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaagaggatgaggaaggtgattgtatagccatgagaattgaga 8161  T
Q  161 gaaattggatg-aaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtgatttggagtcttt 236  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||| | |||||||| |||||||| || |||||||    
T  8162 gaaataggatgaaaaaagagtttgagaatgcagaatatgaatgagtgaatttttgtgttctgtgatgtgaagtcttt 8238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 24 - 235
Target Start/End: Original strand, 18699611 - 18699821
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||| |||||||||| ||||||||||||||  ||||||||||||||||| || || |||||||||||||||||||||  |||||||| |||||||    
T  18699611 agtaagagctttgtagagatggccagtaaaaccgtcacgagtgtcagtgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagag 18699710  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatg-aaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
    || ||||||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||  |  |||||||||||||||||     
T  18699711 gatgaggaaggtgattgcatagccatgagaattgagagaaactagatgaaaaaagagtttgagaatgcagaatatga--ggttaagtttttgtggtctga 18699808  T
Q  223 gatttggagtctt 235  Q
     || |||||||||    
T  18699809 aatgtggagtctt 18699821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 24 - 235
Target Start/End: Original strand, 18655688 - 18655898
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||| ||||||| || || |||||||||||||||||||||  |||||||| |||||||    
T  18655688 agtaagagctttgtagagatgcccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagag 18655787  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatg-aaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
    || ||||||||| ||||| ||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||  |  |||||||||||||| |||    
T  18655788 gatgaggaaggtgattgcctagccatgaaaattgagagaaactggatgaaaaaagagtttgagaatgcagaatatga--gtttaagtttttgtggtatgt 18655885  T
Q  223 gatttggagtctt 235  Q
    ||| |||||||||    
T  18655886 gatgtggagtctt 18655898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 18679778 - 18679978
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||||||||||||||  |||||||||||||  ||||||||| ||||||| || || |||||||||||||||||||||  |||||||| |||||||    
T  18679778 agtaagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagag 18679877  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatg-aaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
     | ||||||||| ||||||||||||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||  |  |||||||||||||| |||    
T  18679878 aatgaggaaggtgattgcatagccatgaaaatagagagaaactggatgaaaaaagagtttgagaatgcagaatatga--gtttaagtttttgtggtatgt 18679975  T
Q  223 gat 225  Q
    |||    
T  18679976 gat 18679978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 18731715 - 18731915
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    |||||||||  ||||||||| ||||||||||||||  ||||||||| ||||||| || || |||||||||||||||||||||  |||||||| |||||||    
T  18731715 agtaagagctctgtagagatggccagtaaaaccgtcacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagag 18731814  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgagagaaattggatg-aaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 222  Q
    || ||||||||| ||||||||||||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||  |  |||||||||||||| |||    
T  18731815 gatgaggaaggtgattgcatagccatgaaaatcgagagaaactggatgaaaaaagagtttgagaatgcagaatatga--gtttaagtttttgtggtatgt 18731912  T
Q  223 gat 225  Q
    |||    
T  18731913 gat 18731915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 17989263 - 17989454
Alignment:
Q  26 taagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagagga 125  Q
    ||||||||||  |||||||||| || |||||||| |||||||| |||||| || || | |||||||| | |||| ||||||||||||||| |||||||||    
T  17989263 taagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcataggaaaatgaagagga 17989362  T
Q  126 agaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggt 218  Q
    | || ||||||||||||| |||||||||||||||||||||  |||| | |||||||||||||||||||||||||||||| | |||||||||||    
T  17989363 atagaaaggtaattgcatggccatgagaattgagagaaataagatg-agaagagtttgagaatgcagaatatgaatgaggatgtttttgtggt 17989454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 218
Target Start/End: Complemental strand, 18073726 - 18073535
Alignment:
Q  26 taagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagagga 125  Q
    ||||||||||  |||||||||| || |||||||| |||||||| |||||| || || | |||||||| | |||| ||||||||||||||| |||||||||    
T  18073726 taagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcataggaaaatgaagagga 18073627  T
Q  126 agaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggt 218  Q
    | || ||||||||||||| |||||||||||||||||||||  |||| | |||||||||||||||||||||||||||||| | |||||||||||    
T  18073626 atagaaaggtaattgcatggccatgagaattgagagaaataagatg-agaagagtttgagaatgcagaatatgaatgaggatgtttttgtggt 18073535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 18724296 - 18724432
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    ||||||||||||||||||||  |||||||||||||  ||||||||| ||||||| || || |||||||||||||||||||||  |||||||| |||||||    
T  18724296 agtaagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagag 18724395  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgaga 160  Q
    || ||||||||| ||||||||||||||||||||||||    
T  18724396 gatgaggaaggtgattgcatagccatgagaattgaga 18724432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 5091191 - 5091240
Alignment:
Q  37 tagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaag 86  Q
    |||||||| |||||||||||||| |||||||| ||||| |||||||||||    
T  5091191 tagagatttccagtaaaaccgtaacgagtgtcggtgcctctaaaactaag 5091240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 218
Target Start/End: Complemental strand, 59534 - 59343
Alignment:
Q  26 taagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagagga 125  Q
    ||||||||||  |||||||||| || |||||||| |||||||| |||||| || || | |||||||| | |||| ||||||||||||||| |||||||||    
T  59534 taagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcataggaaaatgaagagga 59435  T
Q  126 agaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggt 218  Q
    | || ||||||||||||| |||||||||||||||||||||  |||| | |||||||||||||||||||||||||||||| | |||||||||||    
T  59434 atagaaaggtaattgcatggccatgagaattgagagaaataagatg-agaagagtttgagaatgcagaatatgaatgaggatgtttttgtggt 59343  T

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Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 31 - 183
Target Start/End: Original strand, 28164580 - 28164733
Alignment:
Q  31 gccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagaggaagagg 130  Q
    ||||| ||||||| |||||| |||||||  ||||||||| ||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||    
T  28164580 gccttatagagatggccagtgaaaccgtcacgagtgtcactgcccctaaaactgaggaacacttggtatgtgaatccataggaaattgaagaggaagagg 28164679  T
Q  131 aaggtaattgcatagccatgagaattgagagaaattggatga-aaaagagtttg 183  Q
    || |  || | ||||||||||||||||| ||||||||||||| |||||||||||    
T  28164680 aatgcgatcgtatagccatgagaattgacagaaattggatgagaaaagagtttg 28164733  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 28127898 - 28128042
Alignment:
Q  31 gccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagaggaagagg 130  Q
    ||||||||||||| |||||| |||||||  ||||||||| ||||||| || || |||||||||||||| |||||| |||||||||||      |||||||    
T  28127898 gccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaacacttggtatgtgaatccataggaaatt------gaagagg 28127991  T
Q  131 aaggtaattgcatagccatgagaattgagagaaattggatga-aaaagagt 180  Q
    || || |||||||||||||||||||||| | ||||||||||| ||||||||    
T  28127992 aatgtgattgcatagccatgagaattgacaaaaattggatgagaaaagagt 28128042  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 268568 - 268704
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    |||||||||||||||||||| |||| ||||||| |  |||||||||  ||| || ||  | ||||| || ||||| |  ||| |||| || |||||||||    
T  268568 agtaagagccttgtagagatggccaataaaaccctcacgagtgtcaccgcctctgaagttgaggaagacctggtaggcaaatccatatgagattgaagag 268667  T
Q  124 gaagaggaaggtaattgcatagccatgagaattgaga 160  Q
    |||||||||||| |||||||||||||||||| |||||    
T  268668 gaagaggaaggtgattgcatagccatgagaactgaga 268704  T

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Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 29273994 - 29274123
Alignment:
Q  24 agtaagagccttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagag 123  Q
    |||||||| ||||||||||| |||| |||||||||  |||||||||  ||| |||||  | ||||| || |||||||||||| |||| || |||||||||    
T  29273994 agtaagagtcttgtagagatggccaataaaaccgtcacgagtgtcaccgcctctaaagttgaggaagacctggtaagtgaatccatatgagattgaagag 29274093  T
Q  124 gaagaggaaggtaattgcatagccatgaga 153  Q
    |||||||||||| |||||||||||||||||    
T  29274094 gaagaggaaggtgattgcatagccatgaga 29274123  T

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Target: scaffold0038 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 116749 - 116658
Alignment:
Q  34 ttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaattgaagagga 125  Q
    ||||||||||| ||||||||||| || ||||||||| | || ||||||||||||||||| |  || |||||| |||||||||  ||||||||    
T  116749 ttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaacacgtcataggtgaatccataggaaaaggaagagga 116658  T

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Target: scaffold0038; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 27400 - 27343
Alignment:
Q  35 tgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacac 92  Q
    |||||||||| ||||||||||| || ||||||||| | || |||||||||||||||||    
T  27400 tgtagagatttccagtaaaaccataacgagtgtcaatacctctaaaactaaggaacac 27343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 42919 - 42864
Alignment:
Q  34 ttgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaa 89  Q
    ||||||||||| ||||||||||| || ||||||||| | || ||||||||||||||    
T  42919 ttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaa 42864  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 3279638 - 3279592
Alignment:
Q  37 tagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaact 83  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||    
T  3279638 tagagatttccagtaaaaccatagcgagtgtcagtgcccctaaaact 3279592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 58517 - 58595
Alignment:
Q  35 tgtagagattgccagtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcatagga 113  Q
    |||||||||| ||||||||||| || |||||||||   || ||||| ||||||||||| || || |||||| |||||||    
T  58517 tgtagagatttccagtaaaaccatagcgagtgtcacaacctctaaagctaaggaacacgtgataggtgaatccatagga 58595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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