View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14031_high_42 (Length: 271)

Name: NF14031_high_42
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14031_high_42
NF14031_high_42
[»] chr8 (1 HSPs)
chr8 (13-255)||(34194989-34195231)
[»] chr2 (2 HSPs)
chr2 (55-151)||(36095495-36095591)
chr2 (56-146)||(40100501-40100591)
[»] chr3 (3 HSPs)
chr3 (55-151)||(32324565-32324662)
chr3 (70-124)||(34964184-34964238)
chr3 (91-127)||(34199138-34199174)
[»] chr5 (3 HSPs)
chr5 (93-150)||(24917466-24917523)
chr5 (55-127)||(24993327-24993399)
chr5 (55-125)||(33179449-33179519)
[»] chr4 (4 HSPs)
chr4 (55-148)||(4299412-4299505)
chr4 (91-127)||(53380956-53380992)
chr4 (56-107)||(6418781-6418832)
chr4 (55-115)||(48190725-48190785)
[»] chr1 (2 HSPs)
chr1 (55-151)||(50414518-50414614)
chr1 (90-148)||(403317-403375)
[»] chr7 (1 HSPs)
chr7 (55-121)||(24890484-24890550)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 34195231 - 34194989
Alignment:
Q  13 tactaagaaacataatgacaaaacaaaagaatgttctacggggaatcgttcgggagaacccgagttcaattcctactaggaacaatttttggccaggctt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34195231 tactaagaaacataatgacaaaacaaaagaatgttctacggggaatcgtttgggagaacccgagttcaattcctactaggaacaatttttggccaggctt 34195132  T
Q  113 tacttacctcccggctgtactccagattaccagggccccattcttataggaatgggagagttaacaccaaatnnnnnnnnnctaaagaatgtttgtgcaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||    
T  34195131 tacttacctcccggctgtactccagattaccagggccccattcttataggaatgggagagttaacaccaaataaaaaaaaactaaagaatgtttgtgcaa 34195032  T
Q  213 accaaagaaaccattggcttcaaccatgaatcgagttaaaaaa 255  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  34195031 accaaagaaaccattggcttcaagcatgaatcgagttaaaaaa 34194989  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 36095495 - 36095591
Alignment:
Q  55 gaatcgttcgggagaacccgagttcaattcctactaggaacaatttttggccaggctttacttacctcccggctgtactccagattaccagggcccc 151  Q
    ||||||||||||||||||| ||||||||||||  | ||||||||| |||||||| ||||||||||||||| || | |||||||||||| ||| ||||    
T  36095495 gaatcgttcgggagaacccaagttcaattcctggtgggaacaattcttggccagactttacttacctcccagccgaactccagattactaggccccc 36095591  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 40100591 - 40100501
Alignment:
Q  56 aatcgttcgggagaacccgagttcaattcctactaggaacaatttttggccaggctttacttacctcccggctgtactccagattaccagg 146  Q
    |||||||  |||||||||||||||||||||     ||||||||| |||||||| |||||||||||| ||||| | ||||| ||| ||||||    
T  40100591 aatcgttgtggagaacccgagttcaattccagggtggaacaattcttggccagactttacttaccttccggcggaactccggatgaccagg 40100501  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 32324662 - 32324565
Alignment:
Q  55 gaatcgttcgggagaa-cccgagttcaattcctactaggaacaatttttggccaggctttacttacctcccggctgtactccagattaccagggcccc 151  Q
    |||||||||||||||| ||||||||  ||||||  | ||||||||| |||||||||||||||||||||||||||   ||||| |||||| ||||||||    
T  32324662 gaatcgttcgggagaaacccgagtttgattcctggtgggaacaattcttggccaggctttacttacctcccggccaaactccggattactagggcccc 32324565  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 34964184 - 34964238
Alignment:
Q  70 acccgagttcaattcctactaggaacaatttttggccaggctttacttacctccc 124  Q
    |||||||||| ||||||| | ||||||||| ||| |||| |||||||||||||||    
T  34964184 acccgagttcgattcctaatgggaacaattattgaccagactttacttacctccc 34964238  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 34199174 - 34199138
Alignment:
Q  91 ggaacaatttttggccaggctttacttacctcccggc 127  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  34199174 ggaacaattcttggccaggatttacttacctcccggc 34199138  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 24917466 - 24917523
Alignment:
Q  93 aacaatttttggccaggctttacttacctcccggctgtactccagattaccagggccc 150  Q
    ||||||||||||| |||| |||||||||||||||| | |||||| ||||| |||||||    
T  24917466 aacaatttttggctaggcattacttacctcccggccgaactccaaattactagggccc 24917523  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 24993327 - 24993399
Alignment:
Q  55 gaatcgttcgggagaacccgagttcaattcctactaggaacaatttttggccaggctttacttacctcccggc 127  Q
    |||| ||||||||||||||||||   |||||||   | ||||||||||||| |||| ||||||||||||||||    
T  24993327 gaatggttcgggagaacccgagtgtgattcctaggtgaaacaatttttggctaggcattacttacctcccggc 24993399  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 33179449 - 33179519
Alignment:
Q  55 gaatcgttcgggagaacccgagttcaattcctactaggaacaatttttggccaggctttacttacctcccg 125  Q
    ||||||||| |||||| |||||||| ||||||  | | ||||||| ||||  |||||||||||||||||||    
T  33179449 gaatcgttcaggagaagccgagttcgattcctgatggaaacaattcttggataggctttacttacctcccg 33179519  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 148
Target Start/End: Original strand, 4299412 - 4299505
Alignment:
Q  55 gaatcgttcgggagaacccgagttcaattcctactaggaacaatttttggccaggctttacttacctcccggctgtactccagattaccagggc 148  Q
    |||||| |||||||||| ||||||| ||||||    | ||||||| || ||||||||||||||||||| |||||| || || |||||| |||||    
T  4299412 gaatcgctcgggagaacgcgagttcgattcctgggtgtaacaattcttagccaggctttacttacctcgcggctgaacaccggattactagggc 4299505  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 53380956 - 53380992
Alignment:
Q  91 ggaacaatttttggccaggctttacttacctcccggc 127  Q
    ||||||||| |||||||||||||||||||||||||||    
T  53380956 ggaacaattcttggccaggctttacttacctcccggc 53380992  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 6418832 - 6418781
Alignment:
Q  56 aatcgttcgggagaacccgagttcaattcctactaggaacaatttttggcca 107  Q
    |||||||||||||||||||||||||||||||    ||||||||| |||||||    
T  6418832 aatcgttcgggagaacccgagttcaattcctgtgtggaacaattcttggcca 6418781  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 48190725 - 48190785
Alignment:
Q  55 gaatcgttcgggagaacccgagttcaattcctactaggaacaatttttggccaggctttac 115  Q
    ||||||||||||||||||||||||  |||||||   |||||||||  ||||||| ||||||    
T  48190725 gaatcgttcgggagaacccgagtttgattcctaggtggaacaattcctggccagactttac 48190785  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 50414614 - 50414518
Alignment:
Q  55 gaatcgttcgggagaacccgagttcaattcctactaggaacaatttttggccaggctttacttacctcccggctgtactccagattaccagggcccc 151  Q
    |||| |||| ||||||||||||||||||||||    ||||||||| ||||| || |||| ||||||||| ||| | ||| | |||||| ||||||||    
T  50414614 gaattgttcaggagaacccgagttcaattcctgggtggaacaattcttggctagacttttcttacctcctggccgaactacggattactagggcccc 50414518  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 403317 - 403375
Alignment:
Q  90 aggaacaatttttggccaggctttacttacctcccggctgtactccagattaccagggc 148  Q
    |||||||||  |||||||  |||||||||||||| ||| | ||||||||||||||||||    
T  403317 aggaacaatcgttggccatactttacttacctcctggccgaactccagattaccagggc 403375  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 24890484 - 24890550
Alignment:
Q  55 gaatcgttcgggagaacccgagttcaattcctactaggaacaatttttggccaggctttacttacct 121  Q
    ||||| ||| ||||||||||||||  ||||||| | ||||||||| |||| ||| ||||||||||||    
T  24890484 gaatctttcaggagaacccgagtttgattcctaatgggaacaattcttggtcagactttacttacct 24890550  T

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