View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_high_47 (Length: 247)
Name: NF14031_high_47
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_high_47 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 33250323 - 33250544
Alignment:
| Q |
16 |
aaaccaaccaacaattcacaacactttcatcttcatcttcttcttccataaatgttaaatcatctttcaaatattctatggctcttgttgtgactcttcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33250323 |
aaaccaaccaacaattcacaacactttcatcttcatcttcttcttccataaatgttaaatcatctttcaaatattctatggctcttgttgtgactcttcc |
33250422 |
T |
|
| Q |
116 |
cattggcacaccaccacagcttcaacaaatggttttagacacaggaagccaactttcatggattcaatgtcacaacnnnnnnncaccacaaaagaaacaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33250423 |
cattggcacaccaccacagcttcaacaaatggttttagacacaggaagccaactttcatggattcaatgtcacaacaaaaaaacaccacaaaagaaacaa |
33250522 |
T |
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| Q |
216 |
cctcctacaacttcatcctttg |
237 |
Q |
| |
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|||||||| |||||||| |||| |
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| T |
33250523 |
cctcctactacttcatcgtttg |
33250544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 83 - 237
Target Start/End: Original strand, 33264482 - 33264636
Alignment:
| Q |
83 |
caaatattctatggctcttgttgtgactcttcccattggcacaccaccacagcttcaacaaatggttttagacacaggaagccaactttcatggattcaa |
182 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||| |
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| T |
33264482 |
caaatattctatggcccttgttgtgactcttcccattggaacaccaccacagcttcaacaaatggttttggatacaggaagccaagtttcatggattcac |
33264581 |
T |
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| Q |
183 |
tgtcacaacnnnnnnncaccacaaaagaaacaacctcctacaacttcatcctttg |
237 |
Q |
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||| ||||| |||||||||||||||||||||||| |||||||| |||| |
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| T |
33264582 |
tgtgacaacaaaaaaggaccacaaaagaaacaacctcctacgacttcatcgtttg |
33264636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 50236819 - 50237036
Alignment:
| Q |
16 |
aaaccaaccaacaattcacaacactttcatcttcatcttcttcttccataaatgttaaatcatctttcaaatattctatggctcttgttgtgactcttcc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50236819 |
aaaccaaccaacaattcacaacactttcatcttcatcttcttcttccataaatgttaaatcatctttcaaatattctatggctcttgttctgactcttcc |
50236918 |
T |
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| Q |
116 |
cattggcacaccaccacagcttcaacaaat-ggttttagacacaggaagccaactttcatggattcaatgtcacaacnnnnnnncaccacaaaagaaaca |
214 |
Q |
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|||||||||||||||||| ||||||||||| ||| || || |||||||||||| ||||||||||||| ||||||||| |||| ||||||||||| |
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| T |
50236919 |
cattggcacaccaccacaacttcaacaaatgggtattggatacaggaagccaaatttcatggattcagtgtcacaacaaaaaagcaccgcaaaagaaaca |
50237018 |
T |
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| Q |
215 |
acctcctacaacttcatc |
232 |
Q |
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|||||||||||||||||| |
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| T |
50237019 |
acctcctacaacttcatc |
50237036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 29395166 - 29395242
Alignment:
| Q |
114 |
cccattggcacaccaccacagcttcaacaaatggttttagacacaggaagccaactttcatggattcaatgtcacaa |
190 |
Q |
| |
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|||||||| |||||||| || ||||| |||||| || ||||| || |||||||||||||||||||| |||||||| |
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| T |
29395166 |
cccattggaacaccacctcaaactcaaccaatggtgttggacactggtagccaactttcatggattcagtgtcacaa |
29395242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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