View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_high_48 (Length: 245)
Name: NF14031_high_48
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_high_48 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 33235320 - 33235549
Alignment:
| Q |
16 |
acatcattttaaattgcggttgcagtcgcagttacgttgcaagtcttgatattgcagtaaaatactatcgatgtggcagcaattgcagttgcgacgctgt |
115 |
Q |
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| T |
33235320 |
acatcattttaaattgcggttgcagtcgcagttacgttgcaagtcttgatattgcagtaaaatacgatcgatgtggcagcaattgcagttgcgacgctgt |
33235419 |
T |
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| Q |
116 |
tgtagaaatctctaaaacttttatattgcgcaattgtggttgcagaccgcaatttaaaattatgcattattgtttttagtttgtttgaggggaaaccttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
33235420 |
tgtagaaatctctaaaacttttatattgcgcaattgtggttgcagaccgcaatttaaaattatgcattattgtttttagtttatttgagcggaaaccttg |
33235519 |
T |
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| Q |
216 |
acatagctggtaaagttgttgtcatgtgac |
245 |
Q |
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| T |
33235520 |
atgcagctggtaaagttgttgtcatgtgac |
33235549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 36720728 - 36720793
Alignment:
| Q |
181 |
attattgtttttagttt-gtttgaggggaaaccttgacatagctggtaaagttgttgtcatgtgac |
245 |
Q |
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| T |
36720728 |
attattatttttaatttagtttgaggggtaaccttggcgtaactggtaaagttgttgtcatgtgac |
36720793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 41319989 - 41319944
Alignment:
| Q |
200 |
ttgaggggaaaccttgacatagctggtaaagttgttgtcatgtgac |
245 |
Q |
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| T |
41319989 |
ttgaggggtaaccttgacacaactggtaaagttgttgtcatgtgac |
41319944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 22600401 - 22600451
Alignment:
| Q |
195 |
tttgtttgaggggaaaccttgacatagctggtaaagttgttgtcatgtgac |
245 |
Q |
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| T |
22600401 |
tttgcttgaggggtaaccttgacgtaactggtaaagttgttatcatgtgac |
22600451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 31165822 - 31165766
Alignment:
| Q |
16 |
acatcattttaaattgcggttgcagtcgcagttacgttgcaagtcttgatattgcag |
72 |
Q |
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| T |
31165822 |
acatcgttttaaattgcagctgaagtcgcagttacgctgcaaatctttatattgcag |
31165766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 39189612 - 39189559
Alignment:
| Q |
192 |
tagtttgtttgaggggaaaccttgacatagctggtaaagttgttgtcatgtgac |
245 |
Q |
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| T |
39189612 |
tagtttgattgaggggtaaccttggcgcaactggtaaagttgttgtcatgtgac |
39189559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 14530267 - 14530315
Alignment:
| Q |
197 |
tgtttgaggggaaaccttgacatagctggtaaagttgttgtcatgtgac |
245 |
Q |
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| T |
14530267 |
tgtttgaggggtaaccttggcgcaactggtaaagttgttgtcatgtgac |
14530315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 42805477 - 42805521
Alignment:
| Q |
201 |
tgaggggaaaccttgacatagctggtaaagttgttgtcatgtgac |
245 |
Q |
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| T |
42805477 |
tgaggggtaaccttggcgtaactggtaaagttgttgtcatgtgac |
42805521 |
T |
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