View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_high_6 (Length: 613)
Name: NF14031_high_6
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 538; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 16 - 596
Target Start/End: Original strand, 46898989 - 46899567
Alignment:
| Q |
16 |
ctgtgtaagaagtattacaatggtgaggaatgtccttatggtgataagtgtagctttcttcatgaggatcctgctaggtttagggatgattcttggaaaa |
115 |
Q |
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| T |
46898989 |
ctgtgtaagaagtattacattggtgaggaatgtccttatggtgataagtgtagctttcttcatgaggatcctgctaggtttagggatgcttcttggaaaa |
46899088 |
T |
|
| Q |
116 |
caagagagtattctgcaataagcgttggaaatattggttctccaaagtcttttgggtatggttctaacaatttggaaggcattagggctgtgaacaagcc |
215 |
Q |
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| T |
46899089 |
caagagagtgttctgcaataagcgttggaaatattggttctccaaagtcttttgggtatggttctaacaatttggaaggcattagggctgtgaacaagcc |
46899188 |
T |
|
| Q |
216 |
agcaaggagcgcttattggaagactaagctgtgtcaatggcagcatacagggagctgtccctttggggagacctgtgactttgctcatggagaagcaggt |
315 |
Q |
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| T |
46899189 |
agcaaggagtgcttattggaagactaagctgtgtcaatggcagcatacagggagctgtccctttggggagacctgtgactttgctcatggagaagcaggt |
46899288 |
T |
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| Q |
316 |
aatgttaactcatctgtttgttaatttccattctccctattttgattaatggttttgattttaactttatcatataattctactgtttttgtgttcttgt |
415 |
Q |
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| T |
46899289 |
aatgttaactcatctgtttgttaatttccattctccctattttgattaatggttttgattttaactttatcatataattctactgtttttgtgttcttct |
46899388 |
T |
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| Q |
416 |
atgatgattatgtagaaggttattttctctgatgtatgatgtacaaattactgtgtttgaatgtgcgccactttcgttgttgtgtatgatattttcatgg |
515 |
Q |
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| T |
46899389 |
atgatgattatgtagaaggttattttctctgatgtatgatgtacaaattactgtgtttgaatgt--gccactttcgttgttgtgtatgatattttcatgg |
46899486 |
T |
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| Q |
516 |
ttggtttgacataaacttgtccctcctatttgttgtcccaagccttgtctttgcagaaagtgccttcctatcgtagttaat |
596 |
Q |
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| T |
46899487 |
ttggtttgacataaacttgtccctcctatttgttgtccctagccttgtcttcgcagaaagtgccttcctatagtagttaat |
46899567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 193 - 378
Target Start/End: Original strand, 46864032 - 46864220
Alignment:
| Q |
193 |
ggcattagggctgtgaacaagccagcaaggagcgcttattggaagactaagctgtgt---caatggcagcatacagggagctgtccctttggggagacct |
289 |
Q |
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| T |
46864032 |
ggcattagggctgtgaacaagccagctaggggcacttattggaagaataatatgtgtttccgttggcagcatcaagggagctgtccctttggggaggact |
46864131 |
T |
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| Q |
290 |
gtgactttgctcatggagaagcaggtaatgttaactcatctgtttgttaatttccattctccctattttgattaatggttttgatttta |
378 |
Q |
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| T |
46864132 |
gtcacttttctcatggagaagcaggtaataataactcatctttgtgttgatttcccttttcccttttttgattattggtcttggtttta |
46864220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 46890548 - 46890619
Alignment:
| Q |
179 |
ctaacaatttggaaggcattagggctgtgaacaagccagcaaggagcgcttattggaagactaagctgtgtc |
250 |
Q |
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| T |
46890548 |
ctaataatttggaaggcagcagggctttgaacaagcaagcaaggagcacttatcggaagactaagctgtgtc |
46890619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 27 - 171
Target Start/End: Original strand, 46863884 - 46864028
Alignment:
| Q |
27 |
gtattacaatggtgaggaatgtccttatggtgataagtgtagctttcttcatgaggatcctgctaggtttagggatgattcttggaaaacaagagagtat |
126 |
Q |
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| T |
46863884 |
gtattccaatggtgagaaatgtttctttggtagtaagtgtaattttcgtcatgaggatcctgctaagtctagggatcattcttggaagtcaggagagtgt |
46863983 |
T |
|
| Q |
127 |
tctgcaataagcgttggaaatattggttctccaaagtcttttggg |
171 |
Q |
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| T |
46863984 |
tcttctataagcattgggactattggttcttcaaaatcatttggg |
46864028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 46890418 - 46890509
Alignment:
| Q |
16 |
ctgtgtaagaagtattacaatggtgaggaatgtccttatggtgataagtgtagctttcttcatgaggatcctgctaggtttagggatgattc |
107 |
Q |
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| T |
46890418 |
ctgtgcaagaattattgcaatggggaggaatgtccatatggagataactgtatattccttcatgaagatcctgcacagtttagggatgattc |
46890509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 508 - 554
Target Start/End: Original strand, 46890939 - 46890985
Alignment:
| Q |
508 |
tttcatggttggtttgacataaacttgtccctcctatttgttgtccc |
554 |
Q |
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| T |
46890939 |
tttcatgtttggtttgacataaacttgctcctcctacttgttgtccc |
46890985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 19845972 - 19846049
Alignment:
| Q |
173 |
atggttctaacaatttggaaggcattagggctgtgaacaagccagcaaggagcgcttattggaagactaagctgtgtc |
250 |
Q |
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| T |
19845972 |
atggttctaataatttggaaggaaataggtctgtgaacaagccagcaaggggcacttactggaagattaagctgtgtc |
19846049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 9150755 - 9150885
Alignment:
| Q |
34 |
aatggtgaggaatgtccttatggtgataagtgtagctttcttcatgaggatcctgctaggtttagggatgattcttggaaaacaagagagtattctgcaa |
133 |
Q |
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| T |
9150755 |
aatgatgaggaatatccctatggtgagaaatgtagccttcttaatgagggcccttctaggtttagggataattttaagaaattaagagattgttctgcaa |
9150854 |
T |
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| Q |
134 |
taagcgttggaaatattggttctccaaagtc |
164 |
Q |
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||| | | | || |||||||||||||||||| |
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| T |
9150855 |
taaacatcgaaattattggttctccaaagtc |
9150885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 19845851 - 19845907
Alignment:
| Q |
22 |
aagaagtattacaatggtgaggaatgtccttatggtgataagtgtagctttcttcat |
78 |
Q |
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| T |
19845851 |
aagaaatactacaatggtgaggaatgtccttatggtgatacatgtatttttcttcat |
19845907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 22691811 - 22691745
Alignment:
| Q |
177 |
ttctaacaatttggaaggcattagggctgtgaacaagccagcaaggagcgcttattggaagactaag |
243 |
Q |
| |
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|||||| | ||||||||||| |||| |||||||||||||||||||| || |||| ||||||| |||| |
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| T |
22691811 |
ttctaatagtttggaaggcaataggtctgtgaacaagccagcaaggggcacttactggaagattaag |
22691745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 22691942 - 22691886
Alignment:
| Q |
22 |
aagaagtattacaatggtgaggaatgtccttatggtgataagtgtagctttcttcat |
78 |
Q |
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| T |
22691942 |
aagaaatactacaatggtaaagaatgtccttatgatgataagtgtagttttcttcat |
22691886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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