View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_low_10 (Length: 548)
Name: NF14031_low_10
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 251 - 494
Target Start/End: Complemental strand, 39466600 - 39466356
Alignment:
| Q |
251 |
ctataggggtaaaggtttcaaattcctaggtgaaacagaatgatgaagttgtacactacagttccggaatcaaaatgaaattataaactaaacactaaga |
350 |
Q |
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| T |
39466600 |
ctataggtgtaaaggtttcaaattccttggtgaaacagaatgatgaagttgtacactacagttccggaatcaaaatgaaactataaactaaactctgaga |
39466501 |
T |
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| Q |
351 |
acaatagcaatgtaaataaacagtacaggggtaaaggtttaaactttgtaggtgaaagtgaatgatgaagtaataaacagttccagaagaatcaaaatca |
450 |
Q |
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| T |
39466500 |
acaatagcaatgtaaataaacagtacaggggtaaaggtttaaactttgtaggtgaaagtgaatgatgaagtaataaacagttccagaagaatcaaaatca |
39466401 |
T |
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| Q |
451 |
aac-aataatctaagattgcatgcatgttgttgatttttactgac |
494 |
Q |
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| T |
39466400 |
aacaaataatctaagattgcatgcatgttgttgatttttactgac |
39466356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 39466843 - 39466659
Alignment:
| Q |
9 |
acatcatcaacatcataatcttcagattcaaagtcttgacaagaaacatgttttgtcacatctgaatgggatgnnnnnnngtcacaagaagtgagccatt |
108 |
Q |
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| T |
39466843 |
acatcatcaacatcataatcttcagattcaaagtcttgacaagatacatgttttgtcacatctgaatgggatgttttttcttcacaagaagtgagccatt |
39466744 |
T |
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| Q |
109 |
taacatgcaagttcccatcatcatcaccacaaaactttagcttgtgagaagcctcagaatccatgatttaactacagaaactggg |
193 |
Q |
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| T |
39466743 |
taacatgcaagttcccatcatcatcaccacaaaattttagcttgtgagaagcctcagaatccatgatttaactacagaaactggg |
39466659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 39479520 - 39479647
Alignment:
| Q |
9 |
acatcatcaacatcataatcttcagattcaaagtcttgacaagaaacatgtt---ttgtcacatctgaatgggatgnnnnnnngtcacaagaagtgagcc |
105 |
Q |
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| T |
39479520 |
acatcatcaacatcatcatgttcagattcaaagtc-tgacaagaaacaggttccctcatcacatctgaatgggatgcttttttgtcacatgaattgatcc |
39479618 |
T |
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| Q |
106 |
atttaacatgcaagttcccatcatcatca |
134 |
Q |
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| T |
39479619 |
atttaacatttaagttcccatcatcatca |
39479647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 39214548 - 39214481
Alignment:
| Q |
125 |
atcatcatcaccacaaaactttagcttgtgagaagcctcagaatccatgatttaactacagaaactgg |
192 |
Q |
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| T |
39214548 |
atcatcatcaccacaaaattttagcttatcaaaagcctcattacccatcattcaactacagaaactgg |
39214481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 39151468 - 39151412
Alignment:
| Q |
136 |
cacaaaactttagcttgtgagaagcctcagaatccatgatttaactacagaaactgg |
192 |
Q |
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| T |
39151468 |
cacaaaattttagcttattagaagcttcaaaatccatcattcaactacagaaactgg |
39151412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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