View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_low_11 (Length: 518)
Name: NF14031_low_11
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_low_11 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0254 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 19 - 518
Target Start/End: Complemental strand, 7500211 - 7499713
Alignment:
| Q |
19 |
gatcttgctctagtcacatagtctttaccaccatttgagatagtattgagcaatatctaaaggttcaaccattctcctataagtagttctgtcgtagagc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7500211 |
gatcttgctctagtcacatagtctttaccaccatttgagatagtattgagcaatatcttaaggttcaaccattctcctataagtagttctgtcgtagagc |
7500112 |
T |
|
| Q |
119 |
caacgagtacgaagcggcgcgccttctttccgaggcttcatcaacgatccttcaaccatttgttttgtcatgtcagacaaatgctttatcatagatggat |
218 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7500111 |
caacgagtacgaagcggtgcgccttctttccgaggcttcatcaacgatccttcaaccatttgttttgtcatgtcagacaaatgctttatcatagatggat |
7500012 |
T |
|
| Q |
219 |
taaaggaaacatctagtttatactgctattgaggagtttttatttactaatgaaatatgctgccatagtaatacaaaaactccatgtgtgatctttccaa |
318 |
Q |
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| T |
7500011 |
taaaggaaacatctagtttatactgctattgaggagtttttatttgctaatgaaatatgctgccatagtaatacaaaaactccatgtgtgatctttccaa |
7499912 |
T |
|
| Q |
319 |
actataaaaataaaatttcacacgactgaaaaatatttgatctatttcggctgctgagnnnnnnnntaatgggaaaaattattcttcaataacagttctt |
418 |
Q |
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| T |
7499911 |
actataaaaataaaatttcacacgactgaaaaatatttgatctatttcggctgctaagaaaaaaaataatgggaaaaattattcttcaataacagttcta |
7499812 |
T |
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| Q |
419 |
aagtttctgtggctctgaagtctgatctaattgtttatatatggcactatctgttaatacatggctggctttagaatgatgtctcagttttttatgtttc |
518 |
Q |
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| T |
7499811 |
aagtttctgtggctctgaagtctgatctaattgtttatatat-gcactatctgttaatacatggctggttttagaatgatgtctcagttttttatgtttc |
7499713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 385 - 509
Target Start/End: Original strand, 8139017 - 8139134
Alignment:
| Q |
385 |
taatgggaaaaattattcttcaataacagttcttaagtttctgtggctctgaagtctgatctaattg-tttatatatggcactatctgttaatacatggc |
483 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||| ||| ||||||||| ||||| ||| |||||||| ||||||||||||| |
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| T |
8139017 |
taatgggaaaaattattcttccgtaacagttctaaagtttctgtggc-------tctcatctaattgttttatgtat-gcactatcagttaatacatggc |
8139108 |
T |
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| Q |
484 |
tggctttagaatgatgtctcagtttt |
509 |
Q |
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|| |||| |||| ||||||||||||| |
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| T |
8139109 |
tgactttggaattatgtctcagtttt |
8139134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 2153405 - 2153245
Alignment:
| Q |
18 |
agatcttgctctagtcacatagtctttaccaccatttgagatagtattgagcaatatctaaaggttcaaccattctcctataagtagttctgtcgtagag |
117 |
Q |
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||||||| || | ||||||||||||||||||||||| ||||||| ||||||| || ||||| ||||||||||||||||| ||||| |||| | | ||||| |
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| T |
2153405 |
agatctttctgttgtcacatagtctttaccaccatt-gagatagaattgagctatttctaatggttcaaccattctcctgtaagttgttccgccatagag |
2153307 |
T |
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| Q |
118 |
ccaacgagtacgaagcggcgcgccttctttccgaggcttcatcaacgatccttcaaccattt |
179 |
Q |
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||| || |||||||| | ||| ||||||||| ||||||||||||| || ||| |||||||| |
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| T |
2153306 |
ccagcgtgtacgaagggacgcaccttctttctgaggcttcatcaatgaatcttgaaccattt |
2153245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 2168603 - 2168554
Alignment:
| Q |
58 |
atagtattgagcaatatctaaaggttcaaccattctcctataagtagttc |
107 |
Q |
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|||||||||||||||| ||| |||||||||||||| ||||| ||||||| |
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| T |
2168603 |
atagtattgagcaatagctagtggttcaaccattcttctatatgtagttc |
2168554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 2180236 - 2180187
Alignment:
| Q |
58 |
atagtattgagcaatatctaaaggttcaaccattctcctataagtagttc |
107 |
Q |
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|||||||||||||||| ||| |||||||||||||| ||||| ||||||| |
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| T |
2180236 |
atagtattgagcaatagctagtggttcaaccattcttctatatgtagttc |
2180187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 2207471 - 2207430
Alignment:
| Q |
59 |
tagtattgagcaatatctaaaggttcaaccattctcctataa |
100 |
Q |
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||||||||||||||| |||| |||||||||||||| |||||| |
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| T |
2207471 |
tagtattgagcaatagctaatggttcaaccattcttctataa |
2207430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0254 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 2094 - 2167
Alignment:
| Q |
58 |
atagtattgagcaatatctaaaggttcaaccattctcctataagtagttctgtcgtagagccaacgagtacgaa |
131 |
Q |
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|||||||||||||||| ||| |||||||||||||| ||||| ||||||| || ||||||| |||||||||| |
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| T |
2094 |
atagtattgagcaatagctagtggttcaaccattcttctatatgtagttccaccgaagagccagcgagtacgaa |
2167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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