View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14031_low_15 (Length: 475)

Name: NF14031_low_15
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14031_low_15
NF14031_low_15
[»] chr5 (3 HSPs)
chr5 (11-458)||(10255790-10256237)
chr5 (46-459)||(10238406-10238819)
chr5 (36-459)||(10229616-10230039)


Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 11 - 458
Target Start/End: Complemental strand, 10256237 - 10255790
Alignment:
Q  11 cagagacaagagaactatgtcttcatccctacgacaccgacaacttggtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctcct 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10256237 cagagacaaaagaactatgtcttcatccctacgacaccgacaacttggtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctcct 10256138  T
Q  111 tggcaacttcacttccgccacaatctcaaactccggcgacttagcatccatcaccaaaaacttagactctcccttcttctcatcatgaacataactcact 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  10256137 tggcaacttcacttccgccacaatctcaaactccggcgacttagcatccatcaccaaaaacttagactctccctttttctcatcatgcacataactcact 10256038  T
Q  211 aaataaccatcatcctcttcatcaccatcctccctcgccacgaaaaacggctcaccaccataacaatcctctccatacaacctacacccaacttcctccc 310  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10256037 aaataaccatcatcctcttcttcaccatcctccctcgccacgaaaaacggctcaccaccataacaaccctctccatacaacctacacccaacttcctccc 10255938  T
Q  311 ctttcaacacatctatcttcaccacgccagaaatcttcggcattggattcccaattgccgcataaacaaacctattcttcttccccatataatcaccatt 410  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10255937 ctttcaacacatctatcttcaccaccccagaaatcttcggcattggattcccaattgccgcataaacaaacctattcttcttccccatataatcaccatt 10255838  T
Q  411 tatcaccgcgaaatccaggtttcgcgccgataatggttgtcttgatac 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10255837 tatcaccgcgaaatccaggtttcgcgccgataatggttgtcttgatac 10255790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 46 - 459
Target Start/End: Original strand, 10238406 - 10238819
Alignment:
Q  46 accgacaacttggtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctccttggcaacttcacttccgccacaatctcaaactccg 145  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10238406 accgacaacctcgtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctccttggcaacttcacttccgccacaatctcaaactccg 10238505  T
Q  146 gcgacttagcatccatcaccaaaaacttagactctcccttcttctcatcatgaacataactcactaaataaccatcatcctcttcatcaccatcctccct 245  Q
    | |||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||    
T  10238506 gagacttagcatccatcaccaaaaaccttgactctcccttcttctcatcatgcacataactcactaaataaccatcatcctcttcctcaccatcttccct 10238605  T
Q  246 cgccacgaaaaacggctcaccaccataacaatcctctccatacaacctacacccaacttcctcccctttcaacacatctatcttcaccacgccagaaatc 345  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |    
T  10238606 agccacgaaaaacggctcaccaccataacaatcctctccatacaacctacacccaacttcctcccctttcaacacatctatcttcaccacccccgaaaac 10238705  T
Q  346 ttcggcattggattcccaattgccgcataaacaaacctattcttcttccccatataatcaccatttatcaccgcgaaatccaggtttcgcgccgataatg 445  Q
    |||||||||||||||||||| ||||| |||| |||||| |  |||||||||| | | |||   |||||||| || ||||| || ||||  || ||||| |    
T  10238706 ttcggcattggattcccaatcgccgcgtaaataaacctgtgtttcttccccaaaaactcattgtttatcactgccaaatcaagatttcttgctgataacg 10238805  T
Q  446 gttgtcttgatact 459  Q
    ||||||||| ||||    
T  10238806 gttgtcttgttact 10238819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 36 - 459
Target Start/End: Original strand, 10229616 - 10230039
Alignment:
Q  36 tccctacgacaccgacaacttggtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctccttggcaacttcacttccgccacaatc 135  Q
    |||||||||||||||||||||||| |||||||| |  |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  10229616 tccctacgacaccgacaacttggttatgtcactttgcttcacaaacaatccatgaaaaccatagggcaccctcctcggcaacttcacctccgccacaatc 10229715  T
Q  136 tcaaactccggcgacttagcatccatcaccaaaaacttagactctcccttcttctcatcatgaacataactcactaaataaccatcatcctcttcatcac 235  Q
    |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  10229716 tcaaactctggcgacttcgcatccatcaccaaaaacttagattctcccttcttctcatcatgcacataactcactaaataaccatcatcctcttcctcac 10229815  T
Q  236 catcctccctcgccacgaaaaacggctcaccaccataacaatcctctccatacaacctacacccaacttcctcccctttcaacacatctatcttcaccac 335  Q
    || | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  10229816 caccttccatcgccacgaaaaacggctcaccaccataacaaccctctccatacaacctacatccaacttcctcccctttcaacacatcaatcttcaccac 10229915  T
Q  336 gccagaaatcttcggcattggattcccaattgccgcataaacaaacctattcttcttccccatataatcaccatttatcaccgcgaaatccaggtttcgc 435  Q
     || |||| ||| ||||||||||||||||| || ||||||||||||||| |||||||||||| | |||||   |||||||| || ||||| || ||||      
T  10229916 ccccgaaaactttggcattggattcccaatcgctgcataaacaaacctactcttcttccccaaaaaatcattgtttatcactgccaaatcaagatttctt 10230015  T
Q  436 gccgataatggttgtcttgatact 459  Q
    || |||||||||||||||| ||||    
T  10230016 gctgataatggttgtcttgttact 10230039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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