View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_low_18 (Length: 450)
Name: NF14031_low_18
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 6 - 441
Target Start/End: Original strand, 29375004 - 29375437
Alignment:
| Q |
6 |
agtatacaccataaggagtgtgtgcacgcgcgcgcaatatgcaacattattgttctttagtaaatgttttaatcttccgtgctgtcgttaatatgcaaca |
105 |
Q |
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| T |
29375004 |
agtatacaccataaggtgtgtgtgcacgcgagcgcaatatgcaacattattgttctttagtaaatgttttaaacttccgtgctgtcgttaatatgcaaca |
29375103 |
T |
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| Q |
106 |
tttttcttcatctttatggatactaacaactataactgatgaatgtggtgatgtatacagttctactggagatctttatgaatataacagtaaatcaaaa |
205 |
Q |
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| T |
29375104 |
tttttcttcatctttatggatactaacaactataactgatgaatgtggtgatgtatacagttctactggagatctttatgaatataacagtaaatcaaaa |
29375203 |
T |
|
| Q |
206 |
ccatcatggaaaaggcacatatggcaagataaaaaggcacaagtttcatctttgatgccatctaaggggtccactttacatggattaagtgctgatcatt |
305 |
Q |
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| T |
29375204 |
ccatcatggaaaaggcacatatggcaagataaaaaggcacaagtttcatctttgataccatctaaggggtgcactttacatggattaagtgctgatcatt |
29375303 |
T |
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| Q |
306 |
ctgaatctttgtttcttttaaccaaggtacagtaaaaccatgatatcaaataggaaatgtttcatgattaaattgaactttgtaaatcac-ttgtgtctc |
404 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| |||||||| |
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| T |
29375304 |
ctgaatctttgtttcttttaaccaaggtacact--aaccatgatatcaaataggaaatgtttcgtga-caaaatgaactttgtaaatcactttgtgtctt |
29375400 |
T |
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| Q |
405 |
gagcatgtttaacttggcataatgtagaatttcatat |
441 |
Q |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
29375401 |
gagcatgtttaacttggcataatgtagaattccatat |
29375437 |
T |
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