View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_low_19 (Length: 448)
Name: NF14031_low_19
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Complemental strand, 44227232 - 44226812
Alignment:
| Q |
13 |
aatatataatgtatagtatatatcatagttctaaattgcggcctacaaccgcaattgtggctgcaatataaaggctttagagatcttcgcaattacagcc |
112 |
Q |
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| T |
44227232 |
aatatataatgtatagtatatatcatagttctaaattgcggcctacaaccgcaattgtggctgcaatataaaggctttagagatcttcgcaattacagcc |
44227133 |
T |
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| Q |
113 |
acctcagttgtattttcctgcatttagtcataatatcaagtttgcaacataatagtggtcgcaattcagaaccatggtatatatactattataccttcaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44227132 |
acctcagttgtattttcctgcatttagtcataatatcaagtttgcaacttaactgtggtcgcaattcagaaccatggtatagatactattataccttcaa |
44227033 |
T |
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| Q |
213 |
ttccctgaagaattttcttgactctttttgtgcagccatcgcagtggatcaagacttttaaaacccacgtctgcagaatatatataattagttactacca |
312 |
Q |
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| T |
44227032 |
ttccctgaagaattttcttgactctttttgtgcagccatcgcagtggatcaagacttttaaaacccatgtctgcagaatatatataattagttactacca |
44226933 |
T |
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| Q |
313 |
agttgagccaagaatatattatataaatgcacagattcaggaattaaa--gtgtttaattatgattacctgatacttgagtgtttctaatccgggaggaa |
410 |
Q |
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| T |
44226932 |
agttgagccaagaatatataatataaatgcacaggttcaggaattaaagtgtgtttaattatgattacctgatacttgagtgtttctaatccgggaggaa |
44226833 |
T |
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| Q |
411 |
cttgttgatcagcagctggtt |
431 |
Q |
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| T |
44226832 |
cttgttgatcagcagctggtt |
44226812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 22684334 - 22684289
Alignment:
| Q |
53 |
gcctacaaccgcaattgtggctgcaatataaaggctttagagatct |
98 |
Q |
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||||||||| | ||||| |||||||||||||||| ||||||||||| |
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| T |
22684334 |
gcctacaactgtaattgcggctgcaatataaaggttttagagatct |
22684289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 23542650 - 23542590
Alignment:
| Q |
36 |
catagttctaaattgcggcctacaaccgcaattgtggctgcaatataaaggctttagagat |
96 |
Q |
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| T |
23542650 |
catagttctaaattgaggtttccaatcgtaattgtgactgcaatataaaggttttagagat |
23542590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 15418377 - 15418328
Alignment:
| Q |
36 |
catagttctaaattgcggcctacaaccgcaattgtggctgcaatataaag |
85 |
Q |
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||||||||||||||| || ||||||| ||||||||||| ||||||||||| |
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| T |
15418377 |
catagttctaaattgtggtctacaactgcaattgtggccgcaatataaag |
15418328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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