View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_low_20 (Length: 448)
Name: NF14031_low_20
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 10 - 432
Target Start/End: Original strand, 52239042 - 52239464
Alignment:
| Q |
10 |
cacagacacacacatattcttacgtattgtaatgttgacaacagtgagcgtatatttccttcctttcctttagaccattgttgtatcttcttgtcaatga |
109 |
Q |
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| T |
52239042 |
cacagacacacacatattcttacgtattgtaatgttgacaacagtgagcgtatatttccttcctttcctttagaccattgttgtatcttcttgtcaatga |
52239141 |
T |
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| Q |
110 |
cctatatcgtgtacagaaatatatgctcaatatcgttattcttctacaagttgataaaaatgaaacatgtgtaggtaagttgcaaattacttggagttct |
209 |
Q |
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| T |
52239142 |
cctatatcgtgtacagaaatatatgctcaatatcgttattcttctacaagttgataaaaatgaaacatgtgtaggtaagttgcaaattacttggagttct |
52239241 |
T |
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| Q |
210 |
tgaatttcttggttctgtgagacatcaccctcatcttgggataatacttcgatctgcaaattccaaatcaggagcttatccacataagcacgtgaaggta |
309 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52239242 |
tgaatttcttggttctgtgagacgtcaccctcatcttgggataatacttcgatctgcaaattccaaatcaggagcttatccacataagcacgtgaaggta |
52239341 |
T |
|
| Q |
310 |
aaaatttcaacactcggaacatatttaatttaacaatggaataccgtgaaattatcatggaaggactcctctttatcttcaatatcagcaaatgaaatgt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52239342 |
aaaatttcaacactcggaacatatttaatttaacaatggaataccgtgaaattatcatggaaggactcctctttatcttcaatatcagcaaatgaaatgt |
52239441 |
T |
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| Q |
410 |
caggaattgctgctaacaaaatc |
432 |
Q |
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||||||||||||||||||||||| |
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| T |
52239442 |
caggaattgctgctaacaaaatc |
52239464 |
T |
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