View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_low_22 (Length: 427)
Name: NF14031_low_22
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_low_22 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 60 - 427
Target Start/End: Original strand, 44033493 - 44033864
Alignment:
| Q |
60 |
taattgggagaacttatctattaacatacatatttgtatggaagaacttatgcaaattacttatgtccataaattgttcagcttattttcataagttctc |
159 |
Q |
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| T |
44033493 |
taattgggagaacttatctattaacatacatatttgtatggaagaacttatgcaaattacttatgtccataaattgttcagcttattttcataagttctc |
44033592 |
T |
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| Q |
160 |
t---------tacgaaaataattcagaccttatctgaaaataattgatttgatttaattatttttatatgataaatattcatgttataagcacttaatta |
250 |
Q |
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| T |
44033593 |
tataaatgcttacgaaaataattcagaccttatctgaaaataattgatttgatttaattatttttatatgataaatattcatgttataagcacttaatta |
44033692 |
T |
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| Q |
251 |
aattgtctattcattgaaaacattttttagaaaaccaatttaatactattttcattcagtaagtaacatcagtactgtatcgggtataatat------ga |
344 |
Q |
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| T |
44033693 |
aattgtctattcattgaaaacattttttagaaaaccaatttaatactattttc-----------aacatcagtactgtatcgggtataatatgatataga |
44033781 |
T |
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| Q |
345 |
tcatatataccatcgcctttgaaaacagaaatattatgtgtgaattcgatgttgcatagtgtattttcttctaagagcttaaa |
427 |
Q |
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| T |
44033782 |
tcatatataccatcgcctttgaaaacagaaatattatgtatgaattcgatgttgcatagtgtattttctactaagagtttaaa |
44033864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 44016182 - 44016125
Alignment:
| Q |
7 |
caagttcaggaccaatcattgacggagcttcaaggtggcattaacaaaatttgtaatt |
64 |
Q |
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| T |
44016182 |
caagttcaggaccaatcattgatggagcttcaaggtggcattaacaaaatttgtaatt |
44016125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 35993385 - 35993424
Alignment:
| Q |
123 |
tgtccataaattgtt--cagcttattttcataagttctct |
160 |
Q |
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| T |
35993385 |
tgtccataaattgttttcagcttattttcataagttctct |
35993424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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