View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_low_24 (Length: 405)
Name: NF14031_low_24
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_low_24 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 9 - 405
Target Start/End: Complemental strand, 8867246 - 8866849
Alignment:
| Q |
9 |
gaagaaaataatcacaaattatagtggagcataagcccccacactatataattgtctcattcttgattggtgggcacctcatccgtccattctatatttg |
108 |
Q |
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| T |
8867246 |
gaagaaaataatcacaaattatagtggagcataagcccccacactatataattgtttcattcttgattggtgggcacctcatccgtccattctatatttg |
8867147 |
T |
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| Q |
109 |
gatgggtttcatatttcctatgaatccatctaagatgtagaatggacgatgaattagggtgtctattaaacattaagttcatttaaaatgagggagtagt |
208 |
Q |
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| T |
8867146 |
gatgggtttcatatttcctatgaatccatcttagatgtagaatgaacgatgaattagggtgtctattaaacattaagttcatttaaaatgagggagtagt |
8867047 |
T |
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| Q |
209 |
att-aaaagaagcattagagtttggttcttatcactttcttttaggctcaaaaacaaatccctgtaacattagaatggcaagatcacacagtttcatcat |
307 |
Q |
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| T |
8867046 |
attaaaaagaagcattagagtttggttcttatcactttcttttaggctcaaaaacaaatccctgtaacattagaatggcaagatcacacagtttcatcat |
8866947 |
T |
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| Q |
308 |
gctgctgtttctactacagcttatcaataacagcagcagtcatgaagagtgcagagaattgtcatgtggaccttatgaaccgattattcgattcccct |
405 |
Q |
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| T |
8866946 |
gctgctgtttctactacagcttatcaataacagcagcagtcatgaagagtgcagagaattgtcatgtggaccttacgaaccgattattcgattcccct |
8866849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 382
Target Start/End: Complemental strand, 8863162 - 8863012
Alignment:
| Q |
233 |
ttcttatcactttcttttaggctcaaaaac-aaatccctgtaacattagaatggcaagatcacacagtttcatcatgctgctgtttctactacagcttat |
331 |
Q |
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| T |
8863162 |
ttcttatcacattcttttgggctgaaaaaagaaaaccctgtaatatttggatgacaggagcacatagcttgatcatgctgctgcttctactactgcttat |
8863063 |
T |
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| Q |
332 |
caataacagcagcagtcatgaagagtgcagagaattgtcatgtggacctta |
382 |
Q |
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| T |
8863062 |
ccataaaagcagcagtattgacgagtgcagagaatcatcttgtggacctta |
8863012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 9087508 - 9087429
Alignment:
| Q |
324 |
cagcttatcaataacagcagcagtcatgaagagtgcagagaattgtcatgtggaccttatgaaccgattattcgattccc |
403 |
Q |
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| T |
9087508 |
cagcttatcaatagcagcagctatcatgacgagtggacagaattgtcctgtggacctaacgagccgattattcgattccc |
9087429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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