View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_low_26 (Length: 391)
Name: NF14031_low_26
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 29253590 - 29253237
Alignment:
| Q |
19 |
ccaacttgcaaaatcaaattaagatttcaacagctataaatatgggtttgttgggaagctcgtatcctccatcaacaggagcatttagtgcttccgcaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29253590 |
ccaacttgcaaaatcaaattaagatttcaacagctataaatatgggtttgttgggaagctcgtatcctccatcagcaggagcatttagtgcttccgcaat |
29253491 |
T |
|
| Q |
119 |
tccatatataacttcaatagttggttttcttgtgaacaccagggcaccacttcttgcaaatgtgtatccgtacttcacttatatcggtgatccacaaaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
29253490 |
tccatatataacttcaatagttggttttcttgtgaacaccgaggcaccacttcttgcaaatgtgcatccgtacttcgcttatatcggtgatccacaaaac |
29253391 |
T |
|
| Q |
219 |
attcctcttgattttgctctttttaaacaacaaggaaacaatgcagttggttatcaaaacctctttgatgcccagttagattcagtttatgccgctctcg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29253390 |
attcctcttgattttgctctttttaaacaacaaggaaacaatgcagttggttatcaaaacctctttgatgcccagttagattcagtttatgccgctctcg |
29253291 |
T |
|
| Q |
319 |
agaaagtgggcggttctagtgtgaagattgtagtgtctgagagtgggtggccat |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29253290 |
agaaagtgggcggttctagtgtgaagattgtagtgtctgagagtgggtggccat |
29253237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 162 - 372
Target Start/End: Original strand, 29225696 - 29225906
Alignment:
| Q |
162 |
gcaccacttcttgcaaatgtgtatccgtacttcacttatatcggtgatccacaaaacattcctcttgattttgctctttttaaacaacaaggaaacaatg |
261 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||| |||||| ||||||||||||||| | ||||||||||| ||||||||||||||||| |
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| T |
29225696 |
gcaccacttcttgctaatgtgtatccgtacttcgcttatattggtgataaggtaaacattcctcttgactatgctctttttagacaacaaggaaacaatg |
29225795 |
T |
|
| Q |
262 |
cagttggttatcaaaacctctttgatgcccagttagattcagtttatgccgctctcgagaaagtgggcggttctagtgtgaagattgtagtgtctgagag |
361 |
Q |
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|||||||||| |||||||||||||||||||| ||||| ||||| || |||||||| || ||||| |||| ||| |||| ||||| || ||||||||||| |
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| T |
29225796 |
cagttggttaccaaaacctctttgatgcccaattagactcagtatacgccgctcttgaaaaagttggcgcttccggtgttaagatagttgtgtctgagag |
29225895 |
T |
|
| Q |
362 |
tgggtggccat |
372 |
Q |
| |
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||||||||||| |
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| T |
29225896 |
tgggtggccat |
29225906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 162 - 372
Target Start/End: Original strand, 29230360 - 29230570
Alignment:
| Q |
162 |
gcaccacttcttgcaaatgtgtatccgtacttcacttatatcggtgatccacaaaacattcctcttgattttgctctttttaaacaacaaggaaacaatg |
261 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |||||||| | || ||||| |||| ||||||||| ||||||||||| |||||||||||||||| |
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| T |
29230360 |
gcaccacttcttgccaatgtgtatccgtacttcgcttatatcaataataaacaaagcatttctcttgattatgctctttttagacaacaaggaaacaatc |
29230459 |
T |
|
| Q |
262 |
cagttggttatcaaaacctctttgatgcccagttagattcagtttatgccgctctcgagaaagtgggcggttctagtgtgaagattgtagtgtctgagag |
361 |
Q |
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||||||||| | |||||| ||||||||||||||||||||||| || || ||||| |||||||| |||| ||| |||||||||| || ||||| ||||| |
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| T |
29230460 |
aagttggttaccgaaacctttttgatgcccagttagattcagtatacgctgctcttgagaaagttggcgcttccggtgtgaagatagttgtgtccgagag |
29230559 |
T |
|
| Q |
362 |
tgggtggccat |
372 |
Q |
| |
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||||||||||| |
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| T |
29230560 |
tgggtggccat |
29230570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 162 - 372
Target Start/End: Original strand, 29240872 - 29241082
Alignment:
| Q |
162 |
gcaccacttcttgcaaatgtgtatccgtacttcacttatatcggtgatccacaaaacattcctcttgattttgctctttttaaacaacaaggaaacaatg |
261 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||| || |||| |||| ||||||| | ||||||||||||||||||||||||||||| |
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| T |
29240872 |
gcaccacttcttgccaatgtgtatccgtacttcgcttatatcggtaataagcaaagcatttctcttgactatgctctttttaaacaacaaggaaacaatg |
29240971 |
T |
|
| Q |
262 |
cagttggttatcaaaacctctttgatgcccagttagattcagtttatgccgctctcgagaaagtgggcggttctagtgtgaagattgtagtgtctgagag |
361 |
Q |
| |
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||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||| |||||||| || ||| | ||||||||| || ||||| ||||| |
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| T |
29240972 |
atgttgggtaccaaaacctctttgatgcccaattagactcagtatatgctgctcttgagaaagttgggggtaccgatgtgaagatagttgtgtccgagag |
29241071 |
T |
|
| Q |
362 |
tgggtggccat |
372 |
Q |
| |
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||| ||||||| |
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| T |
29241072 |
tggatggccat |
29241082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 370
Target Start/End: Original strand, 29251146 - 29251354
Alignment:
| Q |
162 |
gcaccacttcttgcaaatgtgtatccgtacttcacttatatcggtgatccacaaaacattcctcttgattttgctctttttaaacaacaaggaaacaatg |
261 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||| ||| || ||||| |||| ||||||| | || |||||||||||||||||||||||||| |
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| T |
29251146 |
gcaccacttcttgccaatgtgtatccgtacttcgcttatattggtaataaacaaagcatttctcttgactatgttctttttaaacaacaaggaaacaatg |
29251245 |
T |
|
| Q |
262 |
cagttggttatcaaaacctctttgatgcccagttagattcagtttatgccgctctcgagaaagtgggcggttctagtgtgaagattgtagtgtctgagag |
361 |
Q |
| |
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|||||| || | ||| ||||||||||| |||||||||||| || || ||||| |||||||| || ||||| | ||||||||| || ||||| ||||| |
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| T |
29251246 |
aagttgggtacaacaacatctttgatgccatgttagattcagtatacgctgctcttgagaaagttggaggttccaatgtgaagatagttgtgtccgagag |
29251345 |
T |
|
| Q |
362 |
tgggtggcc |
370 |
Q |
| |
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||| ||||| |
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| T |
29251346 |
tggatggcc |
29251354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 247 - 372
Target Start/End: Original strand, 29218460 - 29218585
Alignment:
| Q |
247 |
aacaaggaaacaatgcagttggttatcaaaacctctttgatgcccagttagattcagtttatgccgctctcgagaaagtgggcggttctagtgtgaagat |
346 |
Q |
| |
|
|||| ||||| |||| ||||||||| |||||| | |||||||| ||| |||||| ||||||| ||||| |||||||| || ||||| | ||||||||| |
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| T |
29218460 |
aacagggaaagaatgaagttggttaccaaaacttgtttgatgcaatgttggattcaatttatgctgctcttgagaaagtagggggttcaaatgtgaagat |
29218559 |
T |
|
| Q |
347 |
tgtagtgtctgagagtgggtggccat |
372 |
Q |
| |
|
||| |||||||||||||||||||||| |
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| T |
29218560 |
tgttgtgtctgagagtgggtggccat |
29218585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 29288313 - 29288426
Alignment:
| Q |
27 |
caaaatcaaattaagatttcaacagctataaatatgggtttgttgggaagctcgtatcctccatcaacaggagcatttagtgcttccgcaattccatata |
126 |
Q |
| |
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||||||||||||||| |||||||||||||| | ||| |||||| ||||| || |||||||||||| ||||| ||||||| |||| ||||| |||||| |
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| T |
29288313 |
caaaatcaaattaaggtttcaacagctatacaaatgaatttgttaggaagttcatatcctccatcacaaggagtatttagtccttcttcaatttcatata |
29288412 |
T |
|
| Q |
127 |
taacttcaatagtt |
140 |
Q |
| |
|
||| | |||||||| |
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|
| T |
29288413 |
taattccaatagtt |
29288426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 185
Target Start/End: Complemental strand, 21287178 - 21287024
Alignment:
| Q |
31 |
atcaaattaagatttcaacagctataaatatgggtttgttgggaagctcgtatcctccatcaacaggagcatttagtgcttccgcaattccatatataac |
130 |
Q |
| |
|
||||||| ||| ||||||| |||||| | ||| |||||||||||| || |||||||||||| |||| |||||||| |||| | ||| ||||||||| |
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| T |
21287178 |
atcaaatcaaggtttcaactgctatacaaatgaatttgttgggaagttcctatcctccatcatcaggtgcatttagcacttcttccattttatatataac |
21287079 |
T |
|
| Q |
131 |
ttcaatagttggttttcttgtgaacaccagggcaccacttcttgcaaatgtgtat |
185 |
Q |
| |
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| |||| ||| |||||||||| | | ||||||||||||||||||||||||| |
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|
| T |
21287078 |
tccaattgttaattttcttgtggagaatgaggcaccacttcttgcaaatgtgtat |
21287024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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