View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_low_27 (Length: 383)
Name: NF14031_low_27
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_low_27 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Complemental strand, 31439810 - 31439438
Alignment:
| Q |
11 |
catcagaaaacacttcggctcaacgtcccatttcccagcgacgcgcctcactgtagcactatcgtactccttcacactcttactcagctgcatcgcactc |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31439810 |
catcggaaaacacttcggctcaacgtcccatttccctgcgacgcgcctcactgtagcactatcgtactccttcacactcttactcagctgcatcgcactc |
31439711 |
T |
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| Q |
111 |
catgtaagatcgttttcaacgacttcacgcgctgatgcgtacgtggcaatgctttgaatcgcgttcccgaagtaatactctggtaactttggttccaaac |
210 |
Q |
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| T |
31439710 |
catgtaagatcgttttcaacgacttcacgcgctgatgcgtacgtggcaatgctttgaatcgcgttcccgaagtaatactctggtaactttggttccaaac |
31439611 |
T |
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| Q |
211 |
ggcttcgaacattcacagcatttctatacgtcgtcgttttagaactttcaagtttcctcgcgcgtgtaacacatcgccacattaacgcgttgagtgattg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31439610 |
ggcttcgaacattcacagcatttctatacgtcgtcgttttagaactatcaagtttcctcgcgcgtgtaacacatcgccacattaacgcgttgagtgattg |
31439511 |
T |
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| Q |
311 |
aaacgatgaaatctctgtcgtttcgacagttactctttctgcaacctttttcatttgagcatcgtcgtttttc |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31439510 |
aaacgatgaaatctctgtcgtttcgacagttactctttctgcaaccgctttcatttgagcatcgtcgtttttc |
31439438 |
T |
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