View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_low_28 (Length: 377)
Name: NF14031_low_28
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 52385676 - 52386024
Alignment:
| Q |
18 |
agttgcagatccagttaccatgcaaaatagtactatgaaggatgatgtaacaaatcttactaataaagtagccacggtgagcacatcaacagcaacacag |
117 |
Q |
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| T |
52385676 |
agttgcagatccaattaccatgcaaaatagtactatgaaggatgatgtaacaaatcttactaataaagtagccaaggtgagcacatcaacagcaacacag |
52385775 |
T |
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| Q |
118 |
cttccgacagatgacaaaacagtcagtgtggtaactctggcgggcgacaacagaggagcaacaatgcatgtggcaggttcccattcccaatcaacaagga |
217 |
Q |
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| T |
52385776 |
cttccgacagatgacaaaacagtcagtgtggtaactctggcgggcgacaacagaggagcaacaatgcatgtggcaggttcccattcccaatcaacaagga |
52385875 |
T |
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| Q |
218 |
agaaggggtcaatccacaacatacaccgaaccaaagaggaagaagagaaagatgaagcgggaaaggcatatgtgaacagcaacatacagagtatgaataa |
317 |
Q |
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| T |
52385876 |
agaaggggtcaatccacaacatacaccgaaccaaagaggaagaagagaaagatgaagcgggaaaggcatatgtgaacagcaacatacagagtatgaataa |
52385975 |
T |
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| Q |
318 |
ttcattgatggtgcaaggttcaataaatggaagagaccccggcgttcat |
366 |
Q |
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| T |
52385976 |
ttcattgatggtgcaaggttcaataaatggaagagaccccggcgttcat |
52386024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 365
Target Start/End: Original strand, 7087813 - 7087895
Alignment:
| Q |
283 |
gcatatgtgaacagcaacatacagagtatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttca |
365 |
Q |
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| T |
7087813 |
gcatatgttaacagcaacatacaaagtatcaataattcactcatgtttcatggttcaatcaatgaaagagaccctggagttca |
7087895 |
T |
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