View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_low_29 (Length: 354)
Name: NF14031_low_29
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 44000294 - 43999946
Alignment:
| Q |
1 |
tccaacacttgatccacgcacaggggaagtgattgctcatgttgctgaaggtgatgctgaagatattaaccgtgcagtatcagcagctcgtgaggccttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44000294 |
tccaacacttgatccacgcacaggggaagtgattgctcatgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggccttt |
44000195 |
T |
|
| Q |
101 |
gataatggaccttggcctaaaatgagtgcttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaatttacgttgatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44000194 |
gataatggaccttggcctaaaatgagtgcttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaatttacgttgatga |
44000095 |
T |
|
| Q |
201 |
ttacttattaataactccttcaggaaagatgtcgtatattgttgcgatttgctgatttggttgagaagcacaatgatgagattgcagctctggaggcatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44000094 |
ttacttattaataactccttcaggaaagatgtcgtatattgttgcgatttgctgatttggttgagaagcacaatgatgagattgcagctctggaggcatg |
43999995 |
T |
|
| Q |
301 |
gaacaatggaaagctttatgaacaggctgccaaagctgaagtacctatg |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43999994 |
gaacaatggaaagctttatgaacaggctgccaaagctgaagtacctatg |
43999946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 8357739 - 8357531
Alignment:
| Q |
1 |
tccaacacttgatccacgcacaggggaagtgattgctcatgttgctgaaggtgatgctgaagatattaaccgtgcagtatcagcagctcgtgaggccttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8357739 |
tccaacacttgatccacgcacaggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggccttt |
8357640 |
T |
|
| Q |
101 |
gataatggaccttggcctaaaatgagtgcttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaatttacgttgatga |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| || |||||||||||| |
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| T |
8357639 |
cataatggaccttggcctaaaatgaatgcttatgtaagcatttccttcagagtgtcctttcttacatgaacttatattagttttaaaattacgttgatga |
8357540 |
T |
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| Q |
201 |
ttacttatt |
209 |
Q |
| |
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| ||||||| |
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| T |
8357539 |
tgacttatt |
8357531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 237 - 349
Target Start/End: Complemental strand, 8357534 - 8357422
Alignment:
| Q |
237 |
tattgttgcgatttgctgatttggttgagaagcacaatgatgagattgcagctctggaggcatggaacaatggaaagctttatgaacaggctgccaaagc |
336 |
Q |
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||||| |||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
8357534 |
tattgctgcgttttgctgatttggttgagaagcacaatgcttagattgcagctctggaggcatggaacaatggaaagctttattaacaggctgacaaagc |
8357435 |
T |
|
| Q |
337 |
tgaagtacctatg |
349 |
Q |
| |
|
| | ||||||||| |
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| T |
8357434 |
ttatgtacctatg |
8357422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 39293987 - 39294195
Alignment:
| Q |
1 |
tccaacacttgatccacgcacaggggaagtgattgctcatgttgctgaaggtgatgctgaagatattaaccgtgcagtatcagcagctcgtgaggccttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| |
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| T |
39293987 |
tccaacacttgatccacgcacaggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagcttgcgaggccttt |
39294086 |
T |
|
| Q |
101 |
gataatggaccttggcctaaaatgagtgcttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaatttacgttgatga |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| ||| |||||| || |||||||||||| |
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| T |
39294087 |
cataatggaccttgacctaaaatgagtgcttatgtaagcatttccttcagcgtgtcctttcttacatgaacttatatgagttttaaaattacgttgatga |
39294186 |
T |
|
| Q |
201 |
ttacttatt |
209 |
Q |
| |
|
| ||||||| |
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|
| T |
39294187 |
tgacttatt |
39294195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 237 - 349
Target Start/End: Original strand, 39294192 - 39294304
Alignment:
| Q |
237 |
tattgttgcgatttgctgatttggttgagaagcacaatgatgagattgcagctctggaggcatggaacaatggaaagctttatgaacaggctgccaaagc |
336 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
39294192 |
tattgctgcgttttgctgatttggttgagaagcacaatgccgagattgcagctctggaggcatggaacaatggaaagctttattaacaggctgacaaagc |
39294291 |
T |
|
| Q |
337 |
tgaagtacctatg |
349 |
Q |
| |
|
| | ||||||||| |
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|
| T |
39294292 |
taacgtacctatg |
39294304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 35212811 - 35212717
Alignment:
| Q |
23 |
ggggaagtgattgctcatgttgctgaaggtgatgctgaagatattaaccgtgcagtatcagcagctcgtgaggcctttgataatggaccttggcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||| | |||| |||||| | ||||| ||||| |
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| T |
35212811 |
ggggaagtgattgctcatgttgctgaaggtgatcaagaagatatcaatcgtgcagtatctgcagctagaaaggcttttgatgaaggaccatggcc |
35212717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 26894390 - 26894437
Alignment:
| Q |
1 |
tccaacacttgatccacgcacaggggaagtgattgctcatgttgctga |
48 |
Q |
| |
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||||||| | |||||| | ||||||||||||||||||||||||||||| |
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| T |
26894390 |
tccaacattggatccaaggacaggggaagtgattgctcatgttgctga |
26894437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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