View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_low_33 (Length: 333)
Name: NF14031_low_33
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 43369101 - 43369417
Alignment:
| Q |
1 |
cggcgatctttttccaactattcgagctagtgcttgacatgtgagatcaatcactggttgtaatcgaaggctatttgcagcacatgccaacccacatagc |
100 |
Q |
| |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43369101 |
cggcgatctttttccaattattcgagcgagtgcttgacatgtgagatcaatcactggttgtaatcgaaggctatttgcagcacatgccaacccacatagc |
43369200 |
T |
|
| Q |
101 |
atttttgtgtctatcttgacgaaattatcatcatacgccttttgttccttgtctgagcggcctggtgctagacgaaatcgacaataattaagaattaagc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43369201 |
atttttgtgtctatcttgacgaaattatcatcatacgccttttgttccttgtctgagcggcctggtgctagacgaaatcgacaataattaagaattaagc |
43369300 |
T |
|
| Q |
201 |
tccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcctgtgcctttttgcaatatttctttacgtataaatgggcaaaa |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43369301 |
tccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcctgtgcctttttgcaatatttctttacgtataaatgggcaaaa |
43369400 |
T |
|
| Q |
301 |
cattgcaatatcttgtt |
317 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
43369401 |
cattgcaatatcttgtt |
43369417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 2 - 315
Target Start/End: Original strand, 43364954 - 43365264
Alignment:
| Q |
2 |
ggcgatctttttccaactattcgagctagtgcttgacatgtgagatcaatcactggttgtaatcgaaggctatttgcagcacatgccaacccacatagca |
101 |
Q |
| |
|
||||| |||||| ||| ||||||||||||||| ||| |||||||||||||| ||| | ||| | || || | ||||||||| |||||| |||| |||| |
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| T |
43364954 |
ggcgaccttttttcaattattcgagctagtgcacgacttgtgagatcaatcaatggccggaattgtagactgtgtgcagcacacgccaactcacagagca |
43365053 |
T |
|
| Q |
102 |
tttttgtgtctatcttgacgaaattatcatcatacgccttttgttccttgtctgagcggcctggtgctagacgaaatcgacaataattaagaattaagct |
201 |
Q |
| |
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| |||||||||||||| |||||| |||||||||| | |||| ||||||||| |||||||||||||||| || |||||||||||||||||||||| ||||| |
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| T |
43365054 |
tatttgtgtctatcttaacgaaactatcatcataggactttcgttccttgtttgagcggcctggtgcttgatgaaatcgacaataattaagaatcaagct |
43365153 |
T |
|
| Q |
202 |
ccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcctgtgcctttttgcaatatttctttacgtataaatgggcaaaac |
301 |
Q |
| |
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|||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| || |||||||||||||||| |
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| T |
43365154 |
ccacattggagaactgacctgttgaggaagacatactgcacaattcttggaagatcccatgcctttttgcaa---ttcttcacatataaatgggcaaaac |
43365250 |
T |
|
| Q |
302 |
attgcaatatcttg |
315 |
Q |
| |
|
|||||||||||||| |
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|
| T |
43365251 |
attgcaatatcttg |
43365264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 147 - 317
Target Start/End: Complemental strand, 11366812 - 11366642
Alignment:
| Q |
147 |
ccttgtctgagcggcctggtgctagacgaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaatt |
246 |
Q |
| |
|
|||||| |||||||||| || || || |||||||||| |||| ||||||||||||| ||||| || ||| || ||||||||||||||| ||||||||| |
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|
| T |
11366812 |
ccttgtttgagcggcctagtacttgatgaaatcgacagtaatcaagaattaagctcagcattgcaggactgacttgttgaggaagacatactgcacaatt |
11366713 |
T |
|
| Q |
247 |
cttggaagatcctgtgcctttttgcaatatttctttacgtataaatgggcaaaacattgcaatatcttgtt |
317 |
Q |
| |
|
|||||||| ||| |||||||||| |||||||||| || ||||||||| |||||||| ||||| ||||||| |
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|
| T |
11366712 |
cttggaagttccattgcctttttgtaatatttcttgacatataaatggacaaaacatcgcaatctcttgtt |
11366642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 309
Target Start/End: Complemental strand, 1360628 - 1360493
Alignment:
| Q |
174 |
gaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcctgtgcctttttgcaa |
273 |
Q |
| |
|
||||| ||||||||| |||||||||| || |||||| | ||| || | || |||||||||| ||||| || |||||||||||||||| ||||||| | |
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|
| T |
1360628 |
gaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagacatattgcagaactcttggaagatcctgtccctttttctga |
1360529 |
T |
|
| Q |
274 |
tatttctttacgtataaatgggcaaaacattgcaat |
309 |
Q |
| |
|
|||||||| || |||||| ||||||| ||||||||| |
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|
| T |
1360528 |
tatttcttgacatataaaagggcaaaccattgcaat |
1360493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 1349970 - 1349863
Alignment:
| Q |
174 |
gaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcctgtgcctttttgcaa |
273 |
Q |
| |
|
||||| ||||||||| ||||||| ||||| ||| ||||| ||| || ||||||||||||||| ||| | || ||||| ||||||| || |||||||| || |
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| T |
1349970 |
gaaattgacaataatcaagaattgagctcaacaatgaaggacttacttgttgaggaagacatattggagaactcttgcaagatccagttcctttttgtaa |
1349871 |
T |
|
| Q |
274 |
tatttctt |
281 |
Q |
| |
|
|||||||| |
|
|
| T |
1349870 |
tatttctt |
1349863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 1343524 - 1343439
Alignment:
| Q |
174 |
gaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcct |
259 |
Q |
| |
|
||||||||||||||| |||||||||| | | |||| || | | || ||||||||||||||| ||| | || |||||||||||||| |
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|
| T |
1343524 |
gaaatcgacaataatcaagaattaaggttaagattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcct |
1343439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 1356063 - 1356148
Alignment:
| Q |
174 |
gaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcct |
259 |
Q |
| |
|
||||||||||||||| |||||||||| | | |||| || | | || ||||||||||||||| ||| | || |||||||||||||| |
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|
| T |
1356063 |
gaaatcgacaataatcaagaattaaggttaagattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcct |
1356148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 317
Target Start/End: Original strand, 29389250 - 29389420
Alignment:
| Q |
147 |
ccttgtctgagcggcctggtgctagacgaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaatt |
246 |
Q |
| |
|
|||||| ||||||||||||| || || |||| |||||||||| ||||| ||||||| |||| | || | || | || |||||||||| | |||||||| |
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|
| T |
29389250 |
ccttgtttgagcggcctggtacttgatgaaaacgacaataatcaagaactaagctcaacatagcaggagagactttttcaggaagacatatcgcacaatt |
29389349 |
T |
|
| Q |
247 |
cttggaagatcctgtgcctttttgcaatatttctttacgtataaatgggcaaaacattgcaatatcttgtt |
317 |
Q |
| |
|
||||||||||| ||||||||||| | |||||||| || |||| ||||||||||||||||| ||||||| |
|
|
| T |
29389350 |
tttggaagatcccgtgcctttttgtattatttcttgacaaataagagggcaaaacattgcaatttcttgtt |
29389420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 317
Target Start/End: Complemental strand, 13590047 - 13589875
Alignment:
| Q |
145 |
ttccttgtctgagcggcctggtgctagacgaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaa |
244 |
Q |
| |
|
|||||||||||||| |||| || | || ||||| ||||||| | ||||||| || || |||||| |||||| |||| || |||||||||| ||||| | |
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|
| T |
13590047 |
ttccttgtctgagcagcctcgtacccgatgaaattgacaatattcaagaattgagttcaacattgcagaacttacctctttaggaagacatattgcagag |
13589948 |
T |
|
| Q |
245 |
ttcttggaagatcctgtgcctttttgcaatatttctttacgtataaatgggcaaaacattgcaatatcttgtt |
317 |
Q |
| |
|
||| |||| |||| | ||||||||||||||||||| || ||| || ||||||||||||||||| ||||||| |
|
|
| T |
13589947 |
ctctcggaaaatcccatccctttttgcaatatttcttgacatatgaaagggcaaaacattgcaatctcttgtt |
13589875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 259
Target Start/End: Complemental strand, 24617998 - 24617858
Alignment:
| Q |
119 |
acgaaattatcatcatacgccttttgttccttgtctgagcggcctggtgctagacgaaatcgacaataattaagaattaagctccacattgaagaactaa |
218 |
Q |
| |
|
||||| || |||||||||| |||||||||||||| |||| ||||| || | || |||||||||||||| |||||||||| | |||||| || | | | |
|
|
| T |
24617998 |
acgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtga |
24617899 |
T |
|
| Q |
219 |
cctgttgaggaagacatgttgcacaattcttggaagatcct |
259 |
Q |
| |
|
| ||||||||||||||| ||| | || |||||||||||||| |
|
|
| T |
24617898 |
cttgttgaggaagacatattggagaagtcttggaagatcct |
24617858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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