View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_low_38 (Length: 298)
Name: NF14031_low_38
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 8859582 - 8859866
Alignment:
| Q |
1 |
atagatggcacaacaaaaggttgctcgataccaactgtttgtggtgatattttcatagataacaatgttgttgttgtagattgtaacatatctactgttt |
100 |
Q |
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| T |
8859582 |
atagatggcacaacaaaaggttgctcggtaccaactgtttgtggtgatattttcatagataacaatgttgttgttgtagattgtaacatatctactgttt |
8859681 |
T |
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| Q |
101 |
tttatacaaatctcattgaggttatgcatgcaattgagatagctttnnnnnnntggttgaatctctctttggtttgaaacaaattctcaattggttactt |
200 |
Q |
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| T |
8859682 |
tttatacaaagctcattgaggttatgcatccaattgagatagctttaaaaaaatggttgaatctctctttggtttgaaacaaattctcaattggttactt |
8859781 |
T |
|
| Q |
201 |
ttgctttcaagaattatggttttgtttctttgaggttaagaaacaagtggctaaattatgcggagttaactaagaatatgtgttt |
285 |
Q |
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| T |
8859782 |
ttgctttaaagaattatggttttgtttctttgaggttaagaaacaagtggctaaattatgcggagttaactaagaatatgtgttt |
8859866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 29656470 - 29656397
Alignment:
| Q |
169 |
ttggtttgaaacaaattctcaattggttacttttgctttcaagaattatggttttgtttctttgaggttaagaa |
242 |
Q |
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| T |
29656470 |
ttggttggaaacaaattctcggttggttactcttacttttaaggatcatggtcttgtttctttgaggttaagaa |
29656397 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 279
Target Start/End: Original strand, 43458641 - 43458765
Alignment:
| Q |
155 |
ggttgaatctctctttggtttgaaacaaattctcaattggttacttttgctttcaagaattatggttttgtttctttgaggttaagaaacaagtggctaa |
254 |
Q |
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| T |
43458641 |
ggttggatttctctttggttggaaacatactctcaattggttactcttactttaaagaatcattgtatggttccttggaggttaagaaaccggtggttga |
43458740 |
T |
|
| Q |
255 |
attatgcggagttaactaagaatat |
279 |
Q |
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| | || ||||||||||||||||| |
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| T |
43458741 |
actgtgttgagttaactaagaatat |
43458765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 43578246 - 43578306
Alignment:
| Q |
158 |
tgaatctctctttggtttgaaacaaattctcaattggttacttttgctttcaagaattatg |
218 |
Q |
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| T |
43578246 |
tgaatctctctttggttggaaatagattatcaattggttgctttggtttttaagaattatg |
43578306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 3363519 - 3363552
Alignment:
| Q |
112 |
ctcattgaggttatgcatgcaattgagatagctt |
145 |
Q |
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| T |
3363519 |
ctcattgaggctatgcatgcaattgagatagctt |
3363552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 3363572 - 3363620
Alignment:
| Q |
164 |
tctctttggtttgaaacaaattctcaattggttacttttgctttcaaga |
212 |
Q |
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||||||||||| |||||| ||| ||| ||||||||| |||||||||||| |
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| T |
3363572 |
tctctttggttggaaacatattttcatttggttactcttgctttcaaga |
3363620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 32954956 - 32955044
Alignment:
| Q |
191 |
ttggttacttttgctttcaagaattatggttttgtttctttgaggttaagaaacaagtggctaaattatgcggagttaactaagaatat |
279 |
Q |
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| T |
32954956 |
ttggttattcttgcttttaagaatcatggtcttgttccttgaaggttaagaaacatatggttgaattatgttaagttaactaagaatat |
32955044 |
T |
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