View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14031_low_4 (Length: 746)
Name: NF14031_low_4
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 649; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 20 - 738
Target Start/End: Original strand, 41875663 - 41876380
Alignment:
| Q |
20 |
ggtcaagagatgaagttgcgaatatattgcgacaagaaaccggtgctatatttataccttcttctaatgatggccgcatactgaggtagagtgtcgaatg |
119 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41875663 |
ggtcaagagatgaagttgcgtatatattacgacaagaaaccggtgctatatttataccttcttctaatgatggccgcatactgaggtagagtgtcgaatg |
41875762 |
T |
|
| Q |
120 |
ttgattaatgttgattatagatcatccaagacttatttagataaacaatttaattttgtgttagtagcaaaaacacttattatataagtacttacttata |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41875763 |
ttgattaatgttgattatagatcatccaagacttatttagataaacaacttaattttgtgttagtagcaaaaacacttattatataagtacttacttata |
41875862 |
T |
|
| Q |
220 |
aataagttatttctgtactaaaagataaaataaggtcaaattatttaatgtaagctatatcctaatttttatccgttataattatttttcagtgttgaat |
319 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
41875863 |
aataagttatttctgtactaaaagataaaataaggtcaaattatttaatataagctataacctaatttttatccgttataatcatttttcagtgttgaat |
41875962 |
T |
|
| Q |
320 |
tgattttttgggctataataataagatctacaactacatgttacttttatttattaaacttgtaaaacttgatgtctaaaatatgttatagggaactgtg |
419 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41875963 |
tgattttttgagctataataataagatctacaacaacatgttacttttatttattaaacttctaaaacttgatgtctaaaatatgttatagggaactgtg |
41876062 |
T |
|
| Q |
420 |
acttgcttttgctaagcattgctctttgacatgtttttagttgatcttgc-gtggccaaggtaccatatccttggagcttttggaacaagcccctctgat |
518 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
41876063 |
acttgcttttgctaagcattgctctttgacatg--tttagttgatcttgcagtggccaaggtaccatatccttggagcttttggaacaagcccctcagat |
41876160 |
T |
|
| Q |
519 |
tgatactcttgtagtacctataagtggtttgttctcatttttattttaatccatcaaccaaatgttttaaaattttcataaattttagtatcctcttctc |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41876161 |
tgatactcttgtagtacctataagtggtttgttctcatttttatgttaatccatcaaccaaatgttttaaaattttcataaattttagtattctcttctc |
41876260 |
T |
|
| Q |
619 |
gattttccaacaaaatgaaaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctga |
718 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41876261 |
gattttccaacaaaatgaaaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctga |
41876360 |
T |
|
| Q |
719 |
gccaaaaggagttgatgatg |
738 |
Q |
| |
|
||||||||||| |||||||| |
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| T |
41876361 |
gccaaaaggagctgatgatg |
41876380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 5269468 - 5269519
Alignment:
| Q |
214 |
cttataaataagttatttctgtactaaaagataaaataaggtcaaattattt |
265 |
Q |
| |
|
|||||| |||| |||||||| || ||||||||||||||| |||||||||||| |
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|
| T |
5269468 |
cttatatataaattatttctttaataaaagataaaataaagtcaaattattt |
5269519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 7e-48; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 438 - 738
Target Start/End: Complemental strand, 24817771 - 24817467
Alignment:
| Q |
438 |
ttgctctttgacatgtttt-tagttgatcttgc-gtggccaaggtaccatatccttggagcttttggaacaagcccctctgattgatactcttgtagtac |
535 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| || | |||||| ||||| || ||||| |||||||||| |
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|
| T |
24817771 |
ttgctctttgacatgtttgctggttgatcttatagtggccaaggtaccatatccttggagtttcttgaacaaatccctcaaatcgatacacttgtagtac |
24817672 |
T |
|
| Q |
536 |
ctataagtggtttgttctca--tttttattttaatccatcaaccaaatgttttaaaattttcataaattttagtatcctcttctcgattttccaacaaaa |
633 |
Q |
| |
|
| ||||||||||||||||| |||||| | ||||||||| | |||||||| | ||||| |||| | |||||||||||||| |||||||| |||||| |
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|
| T |
24817671 |
caataagtggtttgttctctcttttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcctcttatcgattttgttacaaaa |
24817572 |
T |
|
| Q |
634 |
tgaaaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttga |
733 |
Q |
| |
|
||| | ||| |||||| |||||| | | ||| ||||| ||||||||||||| ||||| ||| ||||||| ||||||||||||||||| ||||||| ||| |
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| T |
24817571 |
tgatacttgcaggcggcggtatgatagcaggaatagcaatagctgccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctga |
24817472 |
T |
|
| Q |
734 |
tgatg |
738 |
Q |
| |
|
||||| |
|
|
| T |
24817471 |
tgatg |
24817467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 438 - 738
Target Start/End: Complemental strand, 24800695 - 24800391
Alignment:
| Q |
438 |
ttgctctttgacatgtttt-tagttgatcttgc-gtggccaaggtaccatatccttggagcttttggaacaagcccctctgattgatactcttgtagtac |
535 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| || | |||||| ||||| || ||||| |||||||||| |
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|
| T |
24800695 |
ttgctctttgacatgtttgctggttgatcttatagtggccaaggtaccatatccttggagtttcttgaacaaatccctcaaatcgatacacttgtagtac |
24800596 |
T |
|
| Q |
536 |
ctataagtggtttgttctca--tttttattttaatccatcaaccaaatgttttaaaattttcataaattttagtatcctcttctcgattttccaacaaaa |
633 |
Q |
| |
|
| ||||||||||||||||| |||||| | ||||||||| | |||||||| | ||||| |||| | |||||||||||||| |||||||| |||||| |
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|
| T |
24800595 |
caataagtggtttgttctctcttttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcctcttatcgattttgttacaaaa |
24800496 |
T |
|
| Q |
634 |
tgaaaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttga |
733 |
Q |
| |
|
||| | ||| ||| || |||||| | | ||| ||||| ||||||||||||| ||||| ||| ||||||| ||||||||||||||||| ||||||| ||| |
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|
| T |
24800495 |
tgatacttgcaggtggcggtatgatagcaggaatagcaatagctgccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctga |
24800396 |
T |
|
| Q |
734 |
tgatg |
738 |
Q |
| |
|
||||| |
|
|
| T |
24800395 |
tgatg |
24800391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 24818001 - 24817944
Alignment:
| Q |
52 |
caagaaaccggtgctatatttataccttcttctaatgatggccgcatactgaggtaga |
109 |
Q |
| |
|
|||||||| ||||||| | |||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
24818001 |
caagaaacaagtgctatctatataccttcttcaaatgatggccgcataatgaggtaga |
24817944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 36641810 - 36641862
Alignment:
| Q |
211 |
ttacttataaataagttatttctgtactaaaagataaaataaggtcaaattat |
263 |
Q |
| |
|
||||||||| ||||||||||||| || |||||||||||||| |||||||||| |
|
|
| T |
36641810 |
ttacttatatataagttatttctataacaaaagataaaataaagtcaaattat |
36641862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 24817849 - 24817795
Alignment:
| Q |
149 |
gacttatttagataaacaatttaattttgtgttagtagcaaaaacacttattata |
203 |
Q |
| |
|
||||||||||||||||||| |||| || ||||| ||| || |||||||||||||| |
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|
| T |
24817849 |
gacttatttagataaacaacttaacttagtgtttgtaacataaacacttattata |
24817795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 3e-44; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 439 - 727
Target Start/End: Complemental strand, 40867984 - 40867697
Alignment:
| Q |
439 |
tgctctttgacatgtttttagttgatcttgc-gtggccaaggtaccatatccttggagcttttggaacaagcccctctgattgatactcttgtagtacct |
537 |
Q |
| |
|
||||||||||||||||| | |||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||| | ||||| ||||| ||||| |
|
|
| T |
40867984 |
tgctctttgacatgtttgt--ttgatcttgcagtggccagggtaccatatccttggagcttctggaacaagcccctcaactagatacacttgtggtacca |
40867887 |
T |
|
| Q |
538 |
ataagtggtttgttctcatttttattttaatccatcaacc-aaatgttttaaaattttcataaattttagtatcctcttctcgattttccaacaaaatga |
636 |
Q |
| |
|
|||||||||||||| | |||| || | || |||||| || |||||||| ||||||| ||| ||||| |||||| ||||| ||||||||||| |||||| |
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|
| T |
40867886 |
ataagtggtttgtttgctttttgatgtcaaaccatcatccaaaatgtttcaaaatttgcattgattttggtatccccttcttgattttccaac-aaatga |
40867788 |
T |
|
| Q |
637 |
aaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaagg |
727 |
Q |
| |
|
||| || ||| |||||| || ||| ||||||||||| ||||||||| | || |||||| | ||||| |||||||||||||| || ||||| |
|
|
| T |
40867787 |
aaactgcaggaggtggtttgatatcaggagtagcattggctgccaagtctatcaacccggccattcgtattttggctgctgaacctaaagg |
40867697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 40868558 - 40868457
Alignment:
| Q |
22 |
tcaagagatgaagttgcgaatatattgcgacaagaaaccggtgctatatttataccttcttctaatgatggccgcatactgaggtagagtgtcgaatgtt |
121 |
Q |
| |
|
|||||||| ||| |||||||| | || | |||||||| |||||||| ||||||| | ||| ||||||||| |||||||||||||| | ||| ||||||| |
|
|
| T |
40868558 |
tcaagagaggaaactgcgaataaagtgtggcaagaaactggtgctatttttatacatccttataatgatgggcgcatactgaggtacactgttgaatgtt |
40868459 |
T |
|
| Q |
122 |
ga |
123 |
Q |
| |
|
|| |
|
|
| T |
40868458 |
ga |
40868457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 31705029 - 31705070
Alignment:
| Q |
221 |
ataagttatttctgtactaaaagataaaataaggtcaaatta |
262 |
Q |
| |
|
||||| |||||||||||||||||||||||| | ||||||||| |
|
|
| T |
31705029 |
ataagctatttctgtactaaaagataaaatcatgtcaaatta |
31705070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 41620423 - 41620374
Alignment:
| Q |
214 |
cttataaataagttatttctgtactaaaagataaaataaggtcaaattat |
263 |
Q |
| |
|
|||||| ||||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
41620423 |
cttatatataagttatttttgtaacaaaagataaaataaagtcaaattat |
41620374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 3423893 - 3423849
Alignment:
| Q |
221 |
ataagttatttctgtactaaaagataaaataaggtcaaattattt |
265 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
3423893 |
ataagttatttttgtaccaaaagataaaataaagtcaaattattt |
3423849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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