View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_low_40 (Length: 292)
Name: NF14031_low_40
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 270
Target Start/End: Original strand, 56189742 - 56190014
Alignment:
| Q |
8 |
cagcacagaaaataacagtttttcaaaactcaacaagtttgtatttgatccattaagggaggcaagaggccacaatgcagtaaatt----------aagg |
97 |
Q |
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| T |
56189742 |
cagcacagaagataacagtttttcaaaacccaacaagtttgtatttgatccattaagggaggcaagaggccacaatgcagtaaactgggttggagtaagg |
56189841 |
T |
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| Q |
98 |
agagtcggggcttcctcctggagatcaacggtagacagggaagtctcgcttgatttggctttgggttttgattgagatgatgactccacaagaccaggtg |
197 |
Q |
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| T |
56189842 |
agagtcggggcttcctcctggagatcaacggtagacagggaagtctcgcttgatttggctttgggttttgattgagacgataactccacaagagcaggtg |
56189941 |
T |
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| Q |
198 |
caagccgcttgagcttcaacctgctatcggaagaggttgacgcagcagaggaaggggcttcaagcgaagtagg |
270 |
Q |
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| T |
56189942 |
caagccgcttgagcttcaacctgttatcggaagaggttgacacagcagaggaaggggcttcaagcgaagtagg |
56190014 |
T |
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Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 2391514 - 2391254
Alignment:
| Q |
11 |
cacagaaaataacagtttttcaaaactcaacaagtttgtatttgatccattaagggaggcaagaggccacaatgcagtaaatt----------aaggaga |
100 |
Q |
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||||||| |||||| | | ||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||| ||||| | |||||| |
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| T |
2391514 |
cacagaagataacaatctctcaaaacccaacaagtttgcatttgatccattaagagaggcaagaggccacaatgcggtaaactgggtaggagtaaggagg |
2391415 |
T |
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| Q |
101 |
gtcggggcttcctcctggagatcaacggtagacagggaagtctcgcttgatttggctttgggttttgattgagatgatgactccacaagaccaggtgcaa |
200 |
Q |
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| T |
2391414 |
gtcggggcttcctcctggagatcaacggtagacagggaagtgtcaactaatttggattt------tgattgagaggataactccacaagaccaggtgcaa |
2391321 |
T |
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| Q |
201 |
gccgcttgagcttcaacctgctatcggaagaggttgacgcagcagaggaaggggcttcaagcgaagtagg |
270 |
Q |
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| T |
2391320 |
gacgcttaagcttcaacctgttattagaagaagttga---tgcagaggaaggggcttcaagtgaggtagg |
2391254 |
T |
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