View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_low_47 (Length: 263)
Name: NF14031_low_47
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 29253623 - 29253881
Alignment:
| Q |
1 |
gcacgaagaacaaattgtgatgttgggtcattactgggatttatttcattcccaacaacaatgtacctaaaattaacacctggagtgtattttagtatat |
100 |
Q |
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| T |
29253623 |
gcacgaagaacaaattgtgatgttgggtcattactaggatttatttcattcccaacaacaatgtacctaaaattaacacctggagtgtattttagtatat |
29253722 |
T |
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| Q |
101 |
tgttttggacccaattatttgctgatgaaatatcgttggctattgattgaatgtcttcattagggaccccaatgacaagagataagagagatcctcttga |
200 |
Q |
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| T |
29253723 |
tgttttggacccaattatttgctgatgaaatatcgttggctattgattgaatgtcttcattagggaccccaatgacaagagataagagagatcctcttga |
29253822 |
T |
|
| Q |
201 |
ggcttccaaagttgcttgatcaggattatatattctcattttatgaataatatattgtt |
259 |
Q |
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| T |
29253823 |
ggcttccaaagttgcttgatcaggattatatattctcattttatgaataatattttgtt |
29253881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 29288266 - 29288033
Alignment:
| Q |
7 |
agaacaaattgtgatgttgggtcattactgggatttatttcattcccaacaacaatgtacctaaaattaacacctggagtgtattttagtatattgtttt |
106 |
Q |
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| T |
29288266 |
agaacaaattttgatgttgcatcattactaggatttatttcattcccaacaacaatgtacctaaactttacgtcttgagagtattttagtatgttgtttt |
29288167 |
T |
|
| Q |
107 |
ggacccaattatttgctgatgaaatatcgttggctattgattgaatgtcttcattagggaccccaatgacaagagataagagagatcctcttgaggcttc |
206 |
Q |
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| T |
29288166 |
ggacccaattagtagctgatgaaacactataggcaattgattgaatgtcttcattacggaccccaataacaagttctatattagagcctcttagagcctc |
29288067 |
T |
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| Q |
207 |
caaagttgcttgatcaggattatatattctcatt |
240 |
Q |
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| T |
29288066 |
taaggttgcttgatcaggatcatatattctcatt |
29288033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 29440636 - 29440745
Alignment:
| Q |
145 |
gattgaatgtcttcattagggaccccaatgacaagagataagagagatcctcttgaggcttccaaagttgcttgatcaggatt-atatattctcatttta |
243 |
Q |
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||||||||||||||||||| ||||||||||| ||||||||| || |||| | |||| | ||| ||||||||||||||||| | ||||||||| ||| |
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| T |
29440636 |
gattgaatgtcttcattagagaccccaatgataagagataaattagtccctcgtaaggcattcaaggttgcttgatcaggattaaaatattctcactttt |
29440735 |
T |
|
| Q |
244 |
tgaataatat |
253 |
Q |
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| |||||||| |
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| T |
29440736 |
tcaataatat |
29440745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 29444283 - 29444392
Alignment:
| Q |
145 |
gattgaatgtcttcattagggaccccaatgacaagagataagagagatcctcttgaggcttccaaagttgcttgatcaggatt-atatattctcatttta |
243 |
Q |
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||||||||||||||||||| ||||||||||| ||||||||| || |||| | |||| | ||| ||||||||||||||||| | ||||||||| ||| |
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| T |
29444283 |
gattgaatgtcttcattagagaccccaatgataagagataaattagtccctcgtaaggcattcaaggttgcttgatcaggattaaaatattctcactttt |
29444382 |
T |
|
| Q |
244 |
tgaataatat |
253 |
Q |
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| T |
29444383 |
tcaataatat |
29444392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 13431643 - 13431577
Alignment:
| Q |
113 |
aattatttgctgatgaaatatcgttggctattgattgaatgtcttcattagggaccccaatgacaag |
179 |
Q |
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||||| |||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||||| |
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| T |
13431643 |
aattagttgctgatgaaatactattggcaattgatttgatgtcttcattagggactccaatgacaag |
13431577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 13303327 - 13303393
Alignment:
| Q |
113 |
aattatttgctgatgaaatatcgttggctattgattgaatgtcttcattagggaccccaatgacaag |
179 |
Q |
| |
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||||| |||||||||||| | ||||| ||||||| ||||||||||||||||| ||||||||||| |
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| T |
13303327 |
aattagttgctgatgaaaaactattggcaattgatttgatgtcttcattagggactccaatgacaag |
13303393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 21287229 - 21287462
Alignment:
| Q |
7 |
agaacaaattgtgatgttgggtcattactgggatttatttcattcccaacaacaatgtacctaaaattaaca-cctggagtgtattttagtatattgttt |
105 |
Q |
| |
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||||||||| ||||||||| |||||||| |||| |||||||||||||||||||||||| ||||| || ||| ||| | | ||| |||| |||||||||| |
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| T |
21287229 |
agaacaaatgttgatgttggatcattactaggatctatttcattcccaacaacaatgtatctaaatttgacatccttg-gagtaatttaatatattgttt |
21287327 |
T |
|
| Q |
106 |
tggacccaattatttgctgatgaaatatcgttggctattgattgaatgtcttcattagggaccccaatgacaagagataagagagatcctcttgaggctt |
205 |
Q |
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|||||||||| | | |||||||||| | || || ||||||| ||||| ||||||||| || ||||||||||| || | ||| |||||| |||| |
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| T |
21287328 |
tggacccaataagtagctgatgaaacactattagcaattgattcaatgttttcattaggaactccaatgacaagttctatgttagaacctcttagagctt |
21287427 |
T |
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| Q |
206 |
ccaaagttgcttgatcaggattatatattctcatt |
240 |
Q |
| |
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| || |||||||||||||||| ||| ||||||||| |
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| T |
21287428 |
ctaatgttgcttgatcaggatcataaattctcatt |
21287462 |
T |
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