View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_low_6 (Length: 634)
Name: NF14031_low_6
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 27758825 - 27759081
Alignment:
| Q |
19 |
tctttggctgctcaaaaaagatgacaaggaagctcccttcacactgtatttgaccgagaatcagcctatcataccccgctctaggagtgaaccatcgcat |
118 |
Q |
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| T |
27758825 |
tctttggctgctcaaaaaagatgacaaggaagctctcttcacactgtatttgactaagaatcagcctatcataccccgctctaggagtgaaccatctcac |
27758924 |
T |
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| Q |
119 |
attcctcaatgaagctcttctattagaattttggaggaataatcaactatgattctcgggttttctctcaaaaattgttttgcacatcatccttattttg |
218 |
Q |
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| T |
27758925 |
attcctcaatgaagctcttctattagaattttggaggaataatcaactatgattctcgggttttctctcaaaaattgttttgcacatcatccttattttg |
27759024 |
T |
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| Q |
219 |
gtataacacatactattcttggtacaatttggtgggagaccgttatggtttgccaaa |
275 |
Q |
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| T |
27759025 |
gtataacacatactattcttggtacaatttggtgggagaccattatggtttgccaaa |
27759081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 394 - 584
Target Start/End: Original strand, 27759202 - 27759397
Alignment:
| Q |
394 |
ggtggatgacaaaggatagaggtgaattggggtgtcaatctagtttggatgttcagttttctttttg----atgttttatctcgttcttagttcatttac |
489 |
Q |
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| T |
27759202 |
ggtggatgacaaaggatagaggtgaattggggtgtcaacctagtttggatgttcagtttttttttttttttatgttttatctcgttcttagttcatttac |
27759301 |
T |
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| Q |
490 |
ataaaatatttatttttcaaattttaaccatttgatc-ttttgttaaaaattaaaccattaaacaattaacatctaattttattttcctatttctt |
584 |
Q |
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| T |
27759302 |
ataaaatatttatttttcaaattttaaccatttaatctttttgttaaaaattaaaccattaaacaatcaacatctaattttattttcctatttctt |
27759397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 577 - 613
Target Start/End: Original strand, 27759403 - 27759439
Alignment:
| Q |
577 |
tatttcttctaatattcttcatctttataaagttcat |
613 |
Q |
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| T |
27759403 |
tatttcttctaatattcttcatctttataaagttcat |
27759439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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