View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14031_low_8 (Length: 558)

Name: NF14031_low_8
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14031_low_8
NF14031_low_8
[»] chr3 (10 HSPs)
chr3 (1-216)||(26538747-26538972)
chr3 (466-558)||(26538986-26539078)
chr3 (51-184)||(3149329-3149474)
chr3 (51-249)||(55196576-55196786)
chr3 (52-127)||(13645329-13645405)
chr3 (51-137)||(1677107-1677193)
chr3 (139-184)||(27662557-27662602)
chr3 (51-118)||(13644995-13645063)
chr3 (139-184)||(34595724-34595769)
chr3 (140-184)||(27661162-27661206)
[»] chr4 (7 HSPs)
chr4 (51-184)||(11148417-11148562)
chr4 (53-184)||(34539647-34539790)
chr4 (51-249)||(20945863-20946071)
chr4 (139-183)||(41245926-41245970)
chr4 (139-184)||(2671609-2671654)
chr4 (53-101)||(34538290-34538340)
chr4 (139-184)||(34538193-34538238)
[»] chr7 (4 HSPs)
chr7 (53-179)||(5975505-5975631)
chr7 (51-184)||(38758164-38758309)
chr7 (51-184)||(30045855-30045998)
chr7 (253-293)||(33049108-33049148)
[»] chr5 (2 HSPs)
chr5 (51-137)||(33489746-33489834)
chr5 (141-184)||(6535591-6535634)
[»] chr8 (2 HSPs)
chr8 (51-184)||(7274500-7274643)
chr8 (139-183)||(45447074-45447118)
[»] chr2 (5 HSPs)
chr2 (140-184)||(28167278-28167322)
chr2 (54-127)||(28167176-28167251)
chr2 (51-117)||(5696218-5696284)
chr2 (140-183)||(44906083-44906126)
chr2 (139-181)||(44904601-44904643)
[»] chr1 (4 HSPs)
chr1 (51-184)||(13222980-13223129)
chr1 (53-101)||(40767785-40767835)
chr1 (139-184)||(43882121-43882166)
chr1 (139-184)||(46605869-46605914)
[»] chr6 (1 HSPs)
chr6 (140-184)||(1134207-1134251)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 8e-50; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 26538747 - 26538972
Alignment:
Q  1 ttttaaatttcaaaatttgatgattacgnnnnnnnaatttcatccctatgtggttttagtccctctactaaccagttgccaactcatcaagtgccacgta 100  Q
    |||||||||||||| ||| ||||||| |       |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  26538747 ttttaaatttcaaatttttatgattaagtttttttaatttcgtccctatgtggttttagtccctctactaaccagttgccaactcatcaagtgctaccta 26538846  T
Q  101 ttggttagttagccagcaatgcgttttgttt----------acggaatggaccaatgtcaaaaggttaagtaaatacaagggttgtttcgcaacnnnnnn 190  Q
    ||||| ||||||||||||||||||||| |||          |||||||||||||||||||||||||||| ||||||||| |||| |||||||||          
T  26538847 ttggtcagttagccagcaatgcgttttttttacgaaaacggacggaatggaccaatgtcaaaaggttaaataaatacaaaggttatttcgcaacaaaaaa 26538946  T
Q  191 ntatacatagactaaaaccaaaagag 216  Q
     |||| ||||||||||||||||||||    
T  26538947 atatatatagactaaaaccaaaagag 26538972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 466 - 558
Target Start/End: Original strand, 26538986 - 26539078
Alignment:
Q  466 gaccaactcatctacattattttataataaaatacagctgtgggggtctctttgcagtaagtactaagacgggattatccagtgaatttgatt 558  Q
    |||||||||||||| | ||||||||||||||| |  |||| | ||||||||||||||||| ||| |||| ||||||||||| |||||||||||    
T  26538986 gaccaactcatctaaactattttataataaaaaatggctgagagggtctctttgcagtaaatacaaagatgggattatccaatgaatttgatt 26539078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 51 - 184
Target Start/End: Complemental strand, 3149474 - 3149329
Alignment:
Q  51 tggttttagtccctctactaa--ccagttgccaactcatcaagtgccacgtattggttagttagccagcaatgcgttttgtttacggaatg--------- 139  Q
    |||||||||||||||||||||  |||| ||||||||||||| |||||| ||||   |  |||||||||||||||||||| || ||||||               
T  3149474 tggttttagtccctctactaagaccagctgccaactcatcatgtgccatgtatgcatctgttagccagcaatgcgtttttttgacggaaatagacggcag 3149375  T
Q  140 -gaccaatgtcaaaaggttaagtaaatacaagggttgtttcgcaac 184  Q
     ||||||| |||||||||||||||||||||||||||||||||||||    
T  3149374 agaccaatttcaaaaggttaagtaaatacaagggttgtttcgcaac 3149329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 249
Target Start/End: Complemental strand, 55196786 - 55196576
Alignment:
Q  51 tggttttagtccctctactaaccagttgccaactcatcaagtgccacgtattggttagttagccagcaatgcgttttgttt-----------acggaatg 139  Q
    ||||||||||||||||| |||||| ||||||||||||||  ||| ||||||| ||  |||||||||| | ||||||| |||           |||| | |    
T  55196786 tggttttagtccctctaataaccaattgccaactcatcatatgcgacgtattagtccgttagccagcgaagcgtttttttttacggaaacggacggcagg 55196687  T
Q  140 gaccaatgtcaaaaggttaagtaaatacaagggttgtttcgcaac-nnnnnnntatacatagactaaaaccaaaagagtgtgaacttacatatacctttt 238  Q
    ||| |||||||||  |||||||||||||| |||||||||||||||         |||||| ||||||||||||||  | | |||||||||   |||||||    
T  55196686 gacgaatgtcaaagtgttaagtaaatacaggggttgtttcgcaacaaaaaaaagatacatggactaaaaccaaaaatgcgcgaacttacaaggacctttt 55196587  T
Q  239 tcttatttaag 249  Q
    |||||||||||    
T  55196586 tcttatttaag 55196576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 13645329 - 13645405
Alignment:
Q  52 ggttttagtccctctactaaccag-ttgccaactcatcaagtgccacgtattggttagttagccagcaatgcgtttt 127  Q
    |||||||||||||||||||||||| ||  |||||||||||||||||| |||| |   ||||||||||||||| ||||    
T  13645329 ggttttagtccctctactaaccagtttatcaactcatcaagtgccacatattagcccgttagccagcaatgcatttt 13645405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 1677193 - 1677107
Alignment:
Q  51 tggttttagtccctctactaaccagttgccaactcatcaagtgccacgtattggttagttagccagcaatgcgttttgtttacggaa 137  Q
    ||||||||||||||||| |||||| ||| ||||||||||  |||||| |||||||  |||| ||||| | ||||||| || ||||||    
T  1677193 tggttttagtccctctaataaccaattgtcaactcatcatatgccacatattggtccgttaaccagcgaagcgtttttttgacggaa 1677107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 27662557 - 27662602
Alignment:
Q  139 ggaccaatgtcaaaaggttaagtaaatacaagggttgtttcgcaac 184  Q
    |||||| | ||||||||||||||||||||||||||||||| |||||    
T  27662557 ggaccactttcaaaaggttaagtaaatacaagggttgttttgcaac 27662602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 13645063 - 13644995
Alignment:
Q  51 tggttttagtccctctactaaccagtt-gccaactcatcaagtgccacgtattggttagttagccagca 118  Q
    |||||||||||||||||||||  |||| | ||| |||||||||| |||||||||||| |||| ||||||    
T  13645063 tggttttagtccctctactaataagtttgtcaattcatcaagtgtcacgtattggtttgttaaccagca 13644995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 34595724 - 34595769
Alignment:
Q  139 ggaccaatgtcaaaaggttaagtaaatacaagggttgtttcgcaac 184  Q
    |||||||| ||||||||||||  | |||||||||||||||||||||    
T  34595724 ggaccaatttcaaaaggttaacaagatacaagggttgtttcgcaac 34595769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 27661206 - 27661162
Alignment:
Q  140 gaccaatgtcaaaaggttaagtaaatacaagggttgtttcgcaac 184  Q
    ||||||| ||||||  |||||||||||||| ||||||||||||||    
T  27661206 gaccaatttcaaaaaattaagtaaatacaaaggttgtttcgcaac 27661162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 51 - 184
Target Start/End: Complemental strand, 11148562 - 11148417
Alignment:
Q  51 tggttttagtccctctactaac--cagttgccaactcatcaagtgccacgtattggttagttagccagcaatgcgttttgtttacggaat---------- 138  Q
    |||||||||||||||||||||   ||||||||||||||||| ||||||||| |  ||  |||||||||||||||||||| || ||||||               
T  11148562 tggttttagtccctctactaagatcagttgccaactcatcatgtgccacgtttgtgtctgttagccagcaatgcgtttttttgacggaaatagacggcag 11148463  T
Q  139 ggaccaatgtcaaaaggttaagtaaatacaagggttgtttcgcaac 184  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  11148462 ggaccaatttcaaaaggttaagtaaatacaagggttgtttcgcaac 11148417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 34539647 - 34539790
Alignment:
Q  53 gttttagtccctctactaa--ccagttgccaactcatcaagtgccacgtattggttagttagccagcaatgcgttttgtttacggaat----------gg 140  Q
    |||||||||||||||||||  |||||||||||||||||| ||| |||||||  ||  ||||| || ||||||||||| || || |||           ||    
T  34539647 gttttagtccctctactaagaccagttgccaactcatcatgtgtcacgtatgcgtctgttagtcaacaatgcgtttttttgacagaaatagacggtaggg 34539746  T
Q  141 accaatgtcaaaaggttaagtaaatacaagggttgtttcgcaac 184  Q
    |||||| ||||||||||||||||||| |||||||||||||||||    
T  34539747 accaatttcaaaaggttaagtaaatataagggttgtttcgcaac 34539790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 51 - 249
Target Start/End: Complemental strand, 20946071 - 20945863
Alignment:
Q  51 tggttttagtccctctactaaccagttgccaactcatcaagtgccacgtattggttagttagccagcaatgcgttttgtttacgga----------atgg 140  Q
    ||||||||||||||||| |||||| ||||||||||||||  |||||| |||| ||  ||||| |||||| ||||||| || |||||          | ||    
T  20946071 tggttttagtccctctaataaccaattgccaactcatcatatgccacatattagtccgttagtcagcaaagcgtttttttgacggaaacggacagcaggg 20945972  T
Q  141 accaatgtcaaaaggttaagtaaatacaagggttgtttcgcaacnnnnnnntatacatagactaaaaccaaaagagtgtgaacttacatatacctttttc 240  Q
    || |||| ||||| |||||||||||| | || ||||||||||||        ||||| |||||||||| ||||  | | ||||||||| | |||||||||    
T  20945971 acgaatgccaaaatgttaagtaaatatagggattgtttcgcaacaaaaaaagatacaaagactaaaacaaaaaatgcgcgaacttacaaagacctttttc 20945872  T
Q  241 ttatttaag 249  Q
    |||||||||    
T  20945871 ttatttaag 20945863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 41245970 - 41245926
Alignment:
Q  139 ggaccaatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 183  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||    
T  41245970 ggaccgatgtcaaaaggttaagtaaatataagggttgtttcgcaa 41245926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 2671654 - 2671609
Alignment:
Q  139 ggaccaatgtcaaaaggttaagtaaatacaagggttgtttcgcaac 184  Q
    |||| |||||||||| |||||||||||||| |||||||||||||||    
T  2671654 ggacgaatgtcaaaatgttaagtaaatacaggggttgtttcgcaac 2671609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 34538340 - 34538290
Alignment:
Q  53 gttttagtccctctactaac--cagttgccaactcatcaagtgccacgtat 101  Q
    |||||||||||||||||||   ||||||||| |||||||||||||||||||    
T  34538340 gttttagtccctctactaagagcagttgccatctcatcaagtgccacgtat 34538290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 34538238 - 34538193
Alignment:
Q  139 ggaccaatgtcaaaaggttaagtaaatacaagggttgtttcgcaac 184  Q
    |||||| | |||||| |||||| |||||||||||||||||||||||    
T  34538238 ggaccagtttcaaaaagttaagaaaatacaagggttgtttcgcaac 34538193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 53 - 179
Target Start/End: Original strand, 5975505 - 5975631
Alignment:
Q  53 gttttagtccctctactaaccagttgccaactcatcaagtgccacgtattggttagttagccagcaatgcgttttgtttacggaatggac-caatgtcaa 151  Q
    |||||||||||||||||||||||||||||| |||||||||||||  |||||||  |||| ||| ||||   |||| |||||||||   ||   |||||||    
T  5975505 gttttagtccctctactaaccagttgccaattcatcaagtgccatatattggtccgttaaccaacaat-ttttttttttacggaaacaactggatgtcaa 5975603  T
Q  152 aaggttaagtaaatacaagggttgtttc 179  Q
    ||||||||||||||||||||||||||||    
T  5975604 aaggttaagtaaatacaagggttgtttc 5975631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 38758164 - 38758309
Alignment:
Q  51 tggttttagtccctctactaa--ccagttgccaactcatcaagtgccacgtattggttagttagccagcaatgcgttttgtttacggaat---------- 138  Q
    |||||||||||||||||||||  ||||||||||| |||||| |||||||||||  ||  |||||||| |||||| |||| || ||||||               
T  38758164 tggttttagtccctctactaagaccagttgccaattcatcatgtgccacgtatgcgtctgttagccaacaatgcatttttttgacggaaatagacggtag 38758263  T
Q  139 ggaccaatgtcaaaaggttaagtaaatacaagggttgtttcgcaac 184  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  38758264 ggaccaatttcaaaaggttaagtaaatacaagggttgtttcgcaac 38758309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 184
Target Start/End: Complemental strand, 30045998 - 30045855
Alignment:
Q  51 tggttttagtccctctacta--accagttgccaactcatcaagtgccacgtattggttagttagccagcaatgcgttttgtttacgga----------at 138  Q
    ||||||||||||||||||||  |  ||||| |||||||||| |||||||||||  ||  ||||| |||||||||||||| || |||||          |     
T  30045998 tggttttagtccctctactaagattagttggcaactcatcatgtgccacgtatgcgt--gttagtcagcaatgcgtttttttgacggaaatagacggcag 30045901  T
Q  139 ggaccaatgtcaaaaggttaagtaaatacaagggttgtttcgcaac 184  Q
    |||||||| |||||||||||| |||||||||| ||| |||||||||    
T  30045900 ggaccaatttcaaaaggttaaataaatacaagagttatttcgcaac 30045855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 33049148 - 33049108
Alignment:
Q  253 taaatatgtgattttcatctatctcaatcgaaaaataatgg 293  Q
    |||| |||||||||||||| |||||||| ||||||||||||    
T  33049148 taaaaatgtgattttcatccatctcaattgaaaaataatgg 33049108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 33489746 - 33489834
Alignment:
Q  51 tggttttagtccctctactaa--ccagttgccaactcatcaagtgccacgtattggttagttagccagcaatgcgttttgtttacggaa 137  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||||| |||  ||  |||||||||||||| ||||| || ||||||    
T  33489746 tggtattagtccctctactaagaccagttgccaactcatcaagtgccacatatgcgtccgttagccagcaatgtgttttcttgacggaa 33489834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 6535591 - 6535634
Alignment:
Q  141 accaatgtcaaaaggttaagtaaatacaagggttgtttcgcaac 184  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  6535591 accaatttcaaaaggttaagtaaatacaagggttgtttcgcaac 6535634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 7274500 - 7274643
Alignment:
Q  51 tggttttagtccctctactaaccagttgccaactcatcaagtgccacgtattggttagttagccagcaatgcgttttgtttacggaa----------tgg 140  Q
    ||||||||||| ||||| |||||| ||||||||||||||  |||||| |||| ||  |||||||||| | ||||||| || ||||||           ||    
T  7274500 tggttttagtctctctaataaccaattgccaactcatcatatgccacatattagtccgttagccagcgaagcgtttttttgacggaaacggacggcgggg 7274599  T
Q  141 accaatgtcaaaaggttaagtaaatacaagggttgtttcgcaac 184  Q
    || |||||||||| |||||||||||||| |||||||||||||||    
T  7274600 acgaatgtcaaaatgttaagtaaatacaggggttgtttcgcaac 7274643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 45447118 - 45447074
Alignment:
Q  139 ggaccaatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 183  Q
    |||| ||| |||||| |||||| ||||||||||||||||||||||    
T  45447118 ggacgaatttcaaaaagttaagaaaatacaagggttgtttcgcaa 45447074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 28167278 - 28167322
Alignment:
Q  140 gaccaatgtcaaaaggttaagtaaatacaagggttgtttcgcaac 184  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  28167278 gaccaatttcaaaaggttaagtaaatacaagggttgtttcgcaac 28167322  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 28167176 - 28167251
Alignment:
Q  54 ttttagtccctctactaa--ccagttgccaactcatcaagtgccacgtattggttagttagccagcaatgcgtttt 127  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||| |||  ||  |||| |||||||||||||||    
T  28167176 ttttagtccctctactaagaccagttgccaactcatcatgtgccacatatgcgtctgttatccagcaatgcgtttt 28167251  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 5696218 - 5696284
Alignment:
Q  51 tggttttagtccctctactaaccagttgccaactcatcaagtgccacgtattggttagttagccagc 117  Q
    ||||||||||||||||| ||| || ||||||||||||||  ||||||||||| ||  ||||||||||    
T  5696218 tggttttagtccctctaataatcaattgccaactcatcatatgccacgtattagtccgttagccagc 5696284  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 44906083 - 44906126
Alignment:
Q  140 gaccaatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 183  Q
    ||||||| |||||||||||||||||||||| | |||||||||||    
T  44906083 gaccaatttcaaaaggttaagtaaatacaaagattgtttcgcaa 44906126  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 44904643 - 44904601
Alignment:
Q  139 ggaccaatgtcaaaaggttaagtaaatacaagggttgtttcgc 181  Q
    |||||||| |||||| |||||| ||||||||||||||||||||    
T  44904643 ggaccaatttcaaaaagttaagaaaatacaagggttgtttcgc 44904601  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 184
Target Start/End: Complemental strand, 13223129 - 13222980
Alignment:
Q  51 tggttttagtccctctactaacc--agttgccaactcatcaagtgccacgtattggttagttagccagcaatgcgttttgttt--------------acg 134  Q
    ||||||||||||||||||||||   ||||||||||||||||  ||||||||||  ||  |||||||| ||||||||||| |||              |||    
T  13223129 tggttttagtccctctactaacactagttgccaactcatcatatgccacgtatgcgtctgttagccaacaatgcgttttttttttttacggaaatagacg 13223030  T
Q  135 gaatggaccaatgtcaaaaggttaagtaaatacaagggttgtttcgcaac 184  Q
    | | |||||||| |||||||||||| ||||||||||||||||||||||||    
T  13223029 gcagggaccaatttcaaaaggttaaataaatacaagggttgtttcgcaac 13222980  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 40767835 - 40767785
Alignment:
Q  53 gttttagtccctctactaac--cagttgccaactcatcaagtgccacgtat 101  Q
    |||||||||||||||||||   ||||||||| |||||||||||||||||||    
T  40767835 gttttagtccctctactaagagcagttgccatctcatcaagtgccacgtat 40767785  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 43882166 - 43882121
Alignment:
Q  139 ggaccaatgtcaaaaggttaagtaaatacaagggttgtttcgcaac 184  Q
    |||| |||||||||| ||| |||||||||| |||||||||||||||    
T  43882166 ggacgaatgtcaaaatgtttagtaaatacaggggttgtttcgcaac 43882121  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 46605869 - 46605914
Alignment:
Q  139 ggaccaatgtcaaaaggttaagtaaatacaagggttgtttcgcaac 184  Q
    |||| ||| |||||| |||||| |||||||||||||||||||||||    
T  46605869 ggacgaatttcaaaaagttaagaaaatacaagggttgtttcgcaac 46605914  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 1134251 - 1134207
Alignment:
Q  140 gaccaatgtcaaaaggttaagtaaatacaagggttgtttcgcaac 184  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||||    
T  1134251 gaccaatttcaaaagattaagtgaatacaagggttgtttcgcaac 1134207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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