View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14031_low_9 (Length: 548)
Name: NF14031_low_9
Description: NF14031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14031_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 232 - 537
Target Start/End: Original strand, 41516252 - 41516559
Alignment:
| Q |
232 |
tgaaaaattaatttgggtcacaaggaaagttgtaagtatgtaatgaaattgagtttaaccaagaaaataaggaagagatagaaatataggaatgtgaagt |
331 |
Q |
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| T |
41516252 |
tgaaaaattaatttgggtcacaaggaaagttgtaagtaagtaatgaaattgagtttaacgaagaaaataaagaagagatagaaatataggaatgtgaagt |
41516351 |
T |
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| Q |
332 |
tttgacacaaagcacatttgtctttgttcatttcttatcttac----tactacataaaatatctaacagaaacaaagacacaaaaaacacatatgaacat |
427 |
Q |
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| T |
41516352 |
tttgacacaaa-cacatttgtctttgttcatttcttatcttaaatcttactacataaa-tatctaaaagaaacaaagacacaaaaaacacatatgaacat |
41516449 |
T |
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| Q |
428 |
gttggcaagcacaagcaacagcggcaccgctttaggtggatggacggtgttacaagtatccaaaatcagaaacaaccgttctgtttcatcttccttttct |
527 |
Q |
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| T |
41516450 |
gttggcaagcacaagcaacagcagcaccgctttaggtggatggacggtgttacaagtatccaaaatcagaaacaaccgttctgtttcatcttccttctct |
41516549 |
T |
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| Q |
528 |
cttcggatct |
537 |
Q |
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| T |
41516550 |
cttcgtatct |
41516559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 41515689 - 41515831
Alignment:
| Q |
17 |
tatcctacgtgcattggacctctaccaagtaaggtgcatagttaattttctt-ccctaagaataaaattcacattacttgcattattcacaatttccttc |
115 |
Q |
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| T |
41515689 |
tatcctatgtgcattggacctctaccaagtaaggtgcatagttaattttttttccctaagaatgaaattcacattacttgcattattcacaatttccttc |
41515788 |
T |
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| Q |
116 |
tagtccaattttgtctctcacacaaaataatacgtaaattagt |
158 |
Q |
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| T |
41515789 |
tagtccaattttgtctctcacacaaaataatacgtaaattagt |
41515831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 41516214 - 41516248
Alignment:
| Q |
151 |
aaattagtctctcatataatggataaactaattta |
185 |
Q |
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| T |
41516214 |
aaattagtctttcatataatggataaactaattta |
41516248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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