View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14032_high_1 (Length: 677)

Name: NF14032_high_1
Description: NF14032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14032_high_1
NF14032_high_1
[»] chr3 (1 HSPs)
chr3 (17-668)||(41343207-41343844)


Alignment Details
Target: chr3 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 17 - 668
Target Start/End: Original strand, 41343207 - 41343844
Alignment:
Q  17 caaattggtaactcagattgtgtgacatcatatgtttgaaatatgaactgtccgatctcaaatctgcggtttagatccgcctacagttgagatcggttaa 116  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||                 |||||||||||||||     
T  41343207 caaattggtaactcagattgtgtgacatcatgtgtttgaaatacgaactgtccgatctcaaatctgc-----------------agttgagatcggttac 41343289  T
Q  117 ggtgtgaaacaatcacttaataatatgacaaatataaaatataatgttgtttattacttggttggtgcttaccagccacgaatcataaccagagggagtg 216  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41343290 agtgtgaaacaatcacttaataatatgacaaatataaaatataatgttgtttattacttggttggtgcttaccagccacgaatcataaccagagggagtg 41343389  T
Q  217 aactgagtaaagtttagtggccttggaattagaccatcgcacgagtcttcctttgccttcaaatcaggttgtgatatcaacttagtgttatgtgctgttt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41343390 aactgagtaaagtttagtggccttggaattagaccatcgcacgagtcttcctttgccttcaaatcaggttgtgatatcagcttagtgttatgtgctgttt 41343489  T
Q  317 gaaaacccatactctcacgtagctttgttagcttcttctttataatctacagaagaaagnnnnnnntatcacgtgagaattgtaaaaataatacctatac 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||||||||||||||||||||||||||||||||    
T  41343490 gaaaacccatactctcacgtagctttgttagcttcttctttataatctaaagaagaaagaaaaaaatatcacgtgagaattgtaaaaataatacctatac 41343589  T
Q  417 aaatgtatgtatggaaaacatac---acttcttgattttaccttgaaagtgacaagtagaaaaatcatatgtttcatgtttaattggatctcggatagtg 513  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41343590 aaatgtatgtatggaaaacatacactacttcttgattttaccttgaaagtgacaagtagaaaaatcatatgtttcatgtttaattggatctcggatagtg 41343689  T
Q  514 attccactcacctttgtgcagtaatttcctgaaaacaaaaccgtgaaggtttggatcatcagaactaattatacaaatttgatcaattgtatattagtca 613  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41343690 attccactcacctttgtgcagtaatttcctgaaaacaaaaccgtgaaggtttggatcatcagaactaattatacaaatttgatcaattgtatattattca 41343789  T
Q  614 tggaagaactcaatactacaaagttatacatttttagtattacctccagtattat 668  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41343790 tggaagaactcaatactacaaagttatacatttttagtattacctccagtcttat 41343844  T

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