View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14032_high_2 (Length: 650)
Name: NF14032_high_2
Description: NF14032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14032_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 473; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 628
Target Start/End: Complemental strand, 475539 - 474905
Alignment:
| Q |
1 |
agattaataatttaagttgtaa-tgttcaaattaatctttatttttagaacataaatattagtaccttccaatgtatatttcctcatgaagcaacaagac |
99 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
475539 |
agattaataatttaagttgtaaatgttcaaattaatctttatttttagaacataaatattagtaccttccaatgtatatttcctcatgaagcaacaagac |
475440 |
T |
|
| Q |
100 |
agccaatatagtcacaagaattgtcaagagaggactaaacactgcagagaagagaggtcctctctttgcaatgcaccatgcttggagacaaaatacaact |
199 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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|
| T |
475439 |
agccaatatagtcacaagaattgttaagagaggactaaacactgcagagaagagaggtcctctctttgtaatgcaccatgcttggagacaaaatacaaat |
475340 |
T |
|
| Q |
200 |
gcagaccccataattccctgcaaaatgtatttatttattacaaattaagccactcaatgtgtattaatt---aatatatacaa-------------atca |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
475339 |
gcagaccccataattccctgcaaaatgtatttatttattacaaattaggccactcaatgtgtattaattaataatatatacaagtattgttgtatcatca |
475240 |
T |
|
| Q |
284 |
tggaaaatatgggcatactgcatataaagcgcaaccaaattgaagtagagaattaatcttccatgcattaaggtctggctctaagaatagtgtgactaat |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
475239 |
tggaaaatatgggcatactgcatataaagcgcaaccaaattgaagtagagaattaattttccatgcattaaggtctggctctaagaatagtgtgactaat |
475140 |
T |
|
| Q |
384 |
gctgattgtaatgttgccatgaaacacatccatgctgaaagtgataaataattgggatgacttgcataagctggaacctnnnnnnnnnnnnnnnnnnnnt |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
475139 |
gctgattgtaatgttgccatgaaacacatccatgctgaaagtgataaataattgggatgacttgcataagctggaacct------gaagaagaagaagat |
475046 |
T |
|
| Q |
484 |
ataagaggggtcaggttacatgactattgaagaatatatatataagctagcgatgcttatcgacataaataaatacctgcaaaatgagccaaagtgacca |
583 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
475045 |
ataagaggggtcaggttacatgactattgaaga----atatataagctagcgatgcttatcgacataaataaatacctgcaaaatgagccaaagtgacca |
474950 |
T |
|
| Q |
584 |
ggcaacactacttaccaaaagatacacacatccaagcaaccaact |
628 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
474949 |
ggcaacactacttcccaaaagatacacacatccaagcaaccaact |
474905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 5 - 462
Target Start/End: Complemental strand, 457873 - 457392
Alignment:
| Q |
5 |
taataatttaagttgtaatgttcaaattaatctttatttttagaacataaatattagtaccttccaatgtatatttcctcatgaagcaacaagacagcca |
104 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || |
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|
| T |
457873 |
taataattcaagttgtaatgttcaaattaatatttatttttagaacataaatattagtaccttccaatgtatatttcctcatgaagcagcaaggcaggca |
457774 |
T |
|
| Q |
105 |
a----tatagtcacaagaattgtcaagagaggactaaacactgcagagaagagaggtcctctctttgcaatgcaccatgcttggagacaaaatacaactg |
200 |
Q |
| |
|
||||||||||| | ||| ||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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|
| T |
457773 |
gctagtatagtcacaatcactgttaagagaggattaaacattgcagagaagagaggtcctctctttgtaatgcaccatgcttggagacaaaatacaaatg |
457674 |
T |
|
| Q |
201 |
cagaccccataattccctgcaaaatgtatttatttatt---acaaattaagccactcaatgtgtattaattaat------atatacaa-----atcatgg |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||| || |||||| ||| || ||||| || |||||| |
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|
| T |
457673 |
cagaccccataattccctgcaaaatgtatttatttattacaacaaattaggccacttaaaatgtattcatttatttatttatatataagtattatcatga |
457574 |
T |
|
| Q |
287 |
aaaata--tgggca----tactgcatataaagcgcaaccaaattgaagtagagaattaatcttccatgcattaaggtctggctctaagaatagtgtgact |
380 |
Q |
| |
|
|||||| | || |||||||||||||| ||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| || | | |
|
|
| T |
457573 |
aaaataattaaccacatatactgcatataaagtgcacccaaattgaagtagagaattaattttccatgcattcaggtctggctccaagaataacgtcagt |
457474 |
T |
|
| Q |
381 |
aatgctgattgtaatgttgccatgaaacacatccatgctgaaagtgataaataattgggatgacttgcataagctggaacct |
462 |
Q |
| |
|
| || |||||||||||||| || ||||||||||| ||||| | ||||| |||||| ||||| ||||| ||||||||||||| |
|
|
| T |
457473 |
attgatgattgtaatgttgaaattaaacacatccaagctgacaatgatatataattaggatggcttgcgtaagctggaacct |
457392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 29 - 462
Target Start/End: Complemental strand, 449553 - 449121
Alignment:
| Q |
29 |
aattaatctttatttttagaacataaatattagtaccttccaatgtatatttcctcatgaagcaacaagacagccaatatagtcacaagaattgtcaaga |
128 |
Q |
| |
|
|||||||| | ||| ||||||| ||||||||| |||||||| ||||||| ||||||||||| |||||| |||||||| |||||||| ||||| || |
|
|
| T |
449553 |
aattaatcatcattgttagaacttaaatattaataccttccggtgtatatctcctcatgaagaaacaaggaagccaatacagtcacaattattgtgttga |
449454 |
T |
|
| Q |
129 |
gaggactaaacactgcagagaagagaggtcctctctttgcaatgcaccatgcttggagacaaaatacaactgcagaccccataattccctgcaaaatgta |
228 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| || |||||||||||||| ||| | |
|
|
| T |
449453 |
gaggactaaacattgcagagaagagaggtcctctctttttaatgcaccatgcttggagacaaaataaaactgctgatcccataattccctgaaaa----a |
449358 |
T |
|
| Q |
229 |
tttatttattacaaattaagccactcaatgtgtattaa-ttaatatataca-aatcatggaaaat-atgggcatactgcatataaagcgcaaccaaattg |
325 |
Q |
| |
|
| ||||||||||||||||||||||| | | |||||| ||| |||||| | |||||| ||| | || |||||||||||||||| |||||| | ||| |
|
|
| T |
449357 |
tatatttattacaaattaagccactgatgatatattaatttattatatatatcatcatgaaaattcatccacatactgcatataaagtgcaaccgagttg |
449258 |
T |
|
| Q |
326 |
aagtagagaattaatcttccatgcattaaggtctggctctaagaatagtgtgactaatgctgattgtaatgttgccatgaaacacatccatgctgaaagt |
425 |
Q |
| |
|
|| |||||| ||||||||||||||||| | || |||||| |||||||||| |||| || |||||||||||||| ||| | ||||||||| ||||| | | |
|
|
| T |
449257 |
aactagagatttaatcttccatgcattcaagtttggctcaaagaatagtgccactattgatgattgtaatgttgacattatacacatccaggctgacaat |
449158 |
T |
|
| Q |
426 |
gataaataattgggatgacttgcataagctggaacct |
462 |
Q |
| |
|
||||||||||| ||||| ||||| |||| |||||||| |
|
|
| T |
449157 |
gataaataattaggatggcttgcgtaagatggaacct |
449121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 297 - 462
Target Start/End: Complemental strand, 468682 - 468517
Alignment:
| Q |
297 |
catactgcatataaagcgcaaccaaattgaagtagagaattaatcttccatgcattaaggtctggctctaagaatagtgtgactaatgctgattgtaatg |
396 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| ||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
468682 |
catacagcatataaagcgctaccaaattgaagcagagacttaatcttccatccattaaagtctggctctaagaatagtgtgactaatgctgattgtaatg |
468583 |
T |
|
| Q |
397 |
ttgccatgaaacacatccatgctgaaagtgataaataattgggatgacttgcataagctggaacct |
462 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
468582 |
ttgccatgaaacacatccatgcacaaagtgataagtaattgggatgacttgcataagctggaacct |
468517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 62 - 228
Target Start/End: Complemental strand, 480939 - 480773
Alignment:
| Q |
62 |
taccttccaatgtatatttcctcatgaagcaacaagacagccaatatagtcacaagaattgtcaagagaggactaaacactgcagagaagagaggtcctc |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||| |||||||| | ||| || |||||| |||||| ||||||||||||||||||| |
|
|
| T |
480939 |
taccttccaatgtatatttcctcatgaagcaacaagatagcaaatacagtcacaattaatgtgaaaagaggattaaacatagcagagaagagaggtcctc |
480840 |
T |
|
| Q |
162 |
tctttgcaatgcaccatgcttggagacaaaatacaactgcagaccccataattccctgcaaaatgta |
228 |
Q |
| |
|
|||||| ||||||||||||||| ||| | ||| |||||||| ||||| ||||||| ||||||||| |
|
|
| T |
480839 |
tctttgaaatgcaccatgcttgaagatagaatgttactgcagatcccatgattccctacaaaatgta |
480773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 56 - 227
Target Start/End: Complemental strand, 468928 - 468757
Alignment:
| Q |
56 |
tattagtaccttccaatgtatatttcctcatgaagcaacaagacagccaatatagtcacaagaattgtcaagagaggactaaacactgcagagaagagag |
155 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| | | ||||||||| ||| || |||||| || | |||| |||||| ||||||||||||| |
|
|
| T |
468928 |
tattactaccttccaatgtatatttcctcatgaagcaaaatggcagccaatacagtacaaataattgtgaaaacaggagtaaacatagcagagaagagag |
468829 |
T |
|
| Q |
156 |
gtcctctctttgcaatgcaccatgcttggagacaaaatacaactgcagaccccataattccctgcaaaatgt |
227 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| ||| |||||||| ||||||| |||||||||||||| |
|
|
| T |
468828 |
gtcctctccttgaaatgcaccatgcttggagacagtatattactgcagatcccataactccctgcaaaatgt |
468757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 297 - 462
Target Start/End: Complemental strand, 480689 - 480524
Alignment:
| Q |
297 |
catactgcatataaagcgcaaccaaattgaagtagagaattaatcttccatgcattaaggtctggctctaagaatagtgtgactaatgctgattgtaatg |
396 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | |||||| |||||||| |||| ||||||| || | ||||| |||||||| || |||||| |||| |
|
|
| T |
480689 |
catactgcatataaaatgcaaccaaattgaagcaaagaattgatcttccaaacatttaggtctgattccacgaataatgtgactactgttgattgaaatg |
480590 |
T |
|
| Q |
397 |
ttgccatgaaacacatccatgctgaaagtgataaataattgggatgacttgcataagctggaacct |
462 |
Q |
| |
|
| | ||| |||||||||||||||| || ||| || ||||| ||||| ||||||||||||||||||| |
|
|
| T |
480589 |
tagacattaaacacatccatgctgtaaatgacaagtaattaggatggcttgcataagctggaacct |
480524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 556 - 631
Target Start/End: Complemental strand, 480324 - 480249
Alignment:
| Q |
556 |
atacctgcaaaatgagccaaagtgaccaggcaacactacttaccaaaagatacacacatccaagcaaccaactctc |
631 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| || | |||||| | | |||||||||||||||| |||| |
|
|
| T |
480324 |
atacctgcaaaatgagccaaattgaccaagcaacacagtttcctaaaagacaaagacatccaagcaaccaattctc |
480249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 631
Target Start/End: Complemental strand, 455667 - 455590
Alignment:
| Q |
554 |
aaatacctgcaaaatgagccaaagtgaccaggcaacactacttaccaaaagatacacacatccaagcaaccaactctc |
631 |
Q |
| |
|
||||||||||||||| ||||||| ||| | ||||||||||||| |||| ||| | | ||| |||| ||||||| |||| |
|
|
| T |
455667 |
aaatacctgcaaaattagccaaattgagccggcaacactacttcccaacagaaagagacaaccaatcaaccaattctc |
455590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 297 - 462
Target Start/End: Original strand, 27490045 - 27490210
Alignment:
| Q |
297 |
catactgcatataaagcgcaaccaaattgaagtagagaattaatcttccatgcattaaggtctggctctaagaatagtgtgactaatgctgattgtaatg |
396 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||| |||||||||| ||||| || |||| ||| | ||||||||| |||| || ||||||||||| |
|
|
| T |
27490045 |
catactgaatataaaatgcaaccaaattgaagtagagaagtaatcttccacgcatttagatctgcctccatgaatagtgtcactagtgatgattgtaatg |
27490144 |
T |
|
| Q |
397 |
ttgccatgaaacacatccatgctgaaagtgataaataattgggatgacttgcataagctggaacct |
462 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||||| ||| ||||| |||||||| |||||||||| |
|
|
| T |
27490145 |
ttgccattaaacacatccaggctgaaagagataaggtatttggatggcttgcatatgctggaacct |
27490210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 56 - 234
Target Start/End: Original strand, 27489790 - 27489968
Alignment:
| Q |
56 |
tattagtaccttccaatgtatatttcctcatgaagcaacaagacagccaatatagtcacaagaattgtcaagagaggactaaacactgcagagaagagag |
155 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||| ||||| |||| |||||||| | ||| | | |||| |||||| |||||||| |||| |
|
|
| T |
27489790 |
tattactaccttccaatgtatacttcctcatgaagcaacaaaacagctaatacagtcacaattaatgtggaaacaggagtaaacatagcagagaatagag |
27489889 |
T |
|
| Q |
156 |
gtcctctctttgcaatgcaccatgcttggagacaaaatacaactgcagaccccataattccctgcaaaatgtatttatt |
234 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| || | ||||| || ||||||| ||||| ||||||||||||||| |
|
|
| T |
27489890 |
gtcctcttcttgaaatgcaccatgcttggagacacaaggctactgcggatcccataactccctacaaaatgtatttatt |
27489968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 554 - 631
Target Start/End: Original strand, 27491398 - 27491475
Alignment:
| Q |
554 |
aaatacctgcaaaatgagccaaagtgaccaggcaacactacttaccaaaagatacacacatccaagcaaccaactctc |
631 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||| ||| | |||||| || |||||||||||||||| |||| |
|
|
| T |
27491398 |
aaatacctgcaaaataagccaaactgaccaggcaacacagcttccaaaaagaaccaaacatccaagcaaccaattctc |
27491475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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