View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14032_high_3 (Length: 419)
Name: NF14032_high_3
Description: NF14032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14032_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 8 - 406
Target Start/End: Complemental strand, 33824717 - 33824319
Alignment:
| Q |
8 |
gagcagaacctgtgctactatgtaatggtaaaagaagatttgaccggtcaacaaaagaaaaagaacacgtagttacacttattactgatattgggtttga |
107 |
Q |
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| T |
33824717 |
gagcaaaacctatgctactatgtaatggtaaaagaagatttgaccggtcaacaaaagaaaaagaacacgtagttacacttattactgatattgggtttga |
33824618 |
T |
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| Q |
108 |
attgcaccattggtagttggaagatcagaccaagtaagggttggaattggattccagtaccctaattcaccaccagtaactgaagttgtctccaaaatgt |
207 |
Q |
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| T |
33824617 |
attgcaccattggtagttggaagatcagaccaagtaagggttggaattggattccagtaccctaattcaccaccagtaactgaagttgtctccaaaatgt |
33824518 |
T |
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| Q |
208 |
tggatatagacgaagaatttgaagccgcgttccctagtaataccgttggtgaagatgaaatatcaccaacactgttactagggaaagttgttgatgacct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33824517 |
tggatatagacgaagaatttgaagccgcgttccctagtaataccgttggtgaagatgaaatatcaccaacactgttactagggaaagttgttgatgacct |
33824418 |
T |
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| Q |
308 |
tagtttctggtacagttcttggattccactgttttgatgatgctgatgttgttgatccccaagtacaaatccaccattttgtaattgttgagtttgatt |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33824417 |
tagtttctggtacagttcttggattccactgttttgatgatgctgatgttgttgatccccaagtacaaatccaccattttgtaattgttgagtttgatt |
33824319 |
T |
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