View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14032_high_5 (Length: 410)
Name: NF14032_high_5
Description: NF14032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14032_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 66 - 394
Target Start/End: Complemental strand, 10011099 - 10010771
Alignment:
| Q |
66 |
tgtattgaaagcatacagaaaatgggaggagtaaatgtggtgttcaaaggcacgctgtttctgcttgtgcatggaaggtgttcgctttgtttacacctgt |
165 |
Q |
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| T |
10011099 |
tgtattgaaagcatacagacaatggaaggagagaacttggtgttaaaaggaaagtagttgctgcatgtgcatggaaggtgttcgttttgtttacacctgt |
10011000 |
T |
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| Q |
166 |
tcttatttgtttatcttttgtttacatattttcctaggttcaacaggttttaaaattgtttctctgaatattagagtatctgagcgttgtgcgtgacggc |
265 |
Q |
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| T |
10010999 |
tcttatttggttatcttttgtttacatattttcctaggttcaacaggttttaaaattgtttctctgaatattagagtatctgagcgttgtgcgtgacggc |
10010900 |
T |
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| Q |
266 |
tgttgtcagggagaacggaaagtttggatttagtgtcagtggttgctaattacgttctttaatttgttgatttaatttatgatgttgccatgagtctaat |
365 |
Q |
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| T |
10010899 |
tgttgtcagtgagaacggaaagtttggatttagtgtcagtggttgctaattacgttctttaatttgttgatttaatttatgatgttgccatgagtctaat |
10010800 |
T |
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| Q |
366 |
ctaatgacattcaagtttgcttgaatatg |
394 |
Q |
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| T |
10010799 |
ctaatgacattcaagtttgcttgaatatg |
10010771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 10011045 - 10011087
Alignment:
| Q |
28 |
actttccttttcataccaagttctctccttccattgtctgtat |
70 |
Q |
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| T |
10011045 |
actttccttttaacaccaagttctctccttccattgtctgtat |
10011087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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