View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14032_high_8 (Length: 269)
Name: NF14032_high_8
Description: NF14032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14032_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 10011084 - 10011346
Alignment:
| Q |
1 |
gtatgctttcaatacacactttcctttaaacaaagaagaagcaannnnnnnnnnnnnnnn-atggaagaaagaccaatcgaacctatgnnnnnnntatag |
99 |
Q |
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| T |
10011084 |
gtatgctttcaatacacactttcctttaaacaaaaaagaagcaattttttttttggtttttatggaagaaagaccaatcgaacctatgaaaaaaatatag |
10011183 |
T |
|
| Q |
100 |
aagagaggtgctcctgttttggagaattggacatnnnnnnntttccttaaaaattgtctttttgttctatattctttctcgtttctgaagcagaagagtt |
199 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10011184 |
aagagaggtgctcctgttttggagaattggacataaaaaattttccttaaaaattgtctttttgttctatattctttctcgtttctgaagcagaagagtt |
10011283 |
T |
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| Q |
200 |
atttttctttcctttttcgaagggagacataaatgatttagaagagttggacatcaaattcat |
262 |
Q |
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| T |
10011284 |
atttttctttcctttttcgaagggagacataaatgatttagaagagttggacatcaaattcat |
10011346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 561565 - 561652
Alignment:
| Q |
100 |
aagagaggtgctcctgttttggagaattggacatnnnnnnntttccttaaaaattgtctttttgttctatattctttctcgtttctga |
187 |
Q |
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| T |
561565 |
aagagaggtgttcctgttttggagaattggacatcaaattttttccttcaaaattgtccttttcttctatattctttctcgtttctga |
561652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 17688868 - 17688782
Alignment:
| Q |
100 |
aagagaggtgctcctgttttggagaattggacatnnnnnnntttccttaaaaattgtctttttgttctatattctttctcgtttctga |
187 |
Q |
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|||||||||| ||||||||||||||||| ||||| ||| ||| ||||||||| |||| |||||||||||||||||||||||| |
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| T |
17688868 |
aagagaggtgttcctgttttggagaattagacatcaaatttttt-ctttaaaattgtccttttcttctatattctttctcgtttctga |
17688782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 1678868 - 1678954
Alignment:
| Q |
100 |
aagagaggtgctcctgttttggagaattggacatnnnnnnntttccttaaaaattgtctttttgttctatattctttctcgtttctga |
187 |
Q |
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|||||||||| ||||||||||||||||| ||||| |||| || ||||||||| |||| |||||||||||||||||||||||| |
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| T |
1678868 |
aagagaggtgttcctgttttggagaattagacatcaaattttttc-ttcaaaattgtccttttcttctatattctttctcgtttctga |
1678954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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