View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14032_low_13 (Length: 215)
Name: NF14032_low_13
Description: NF14032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14032_low_13 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 7652344 - 7652130
Alignment:
| Q |
1 |
ttatttccatttttaccctctggcattccaccttgattctgactctgattatttccaccgtcgccaccaccacctttctttcctccattcccatttccac |
100 |
Q |
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| T |
7652344 |
ttatttccatttttaccttctggcattccaccttgattctgaatctgattatttccaccttcgccaccaccacctttctttcctccattcccatttccac |
7652245 |
T |
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| Q |
101 |
cagccaaggaatgaacttgaacaggcataggtactccaccacttccgccaccaccttttatttcaatgcctccaccatttcctgcactgatcttttgagc |
200 |
Q |
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| T |
7652244 |
cagccaaggaatgaacttgaacaggcataggtcctccaacacttccgccaccaccttttatttcaatgcctccaccatttcctgcactgatcttttgagc |
7652145 |
T |
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| Q |
201 |
attcatcatcatgtg |
215 |
Q |
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| T |
7652144 |
attcatcatcatgtg |
7652130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 7657695 - 7657639
Alignment:
| Q |
27 |
tccaccttgattctgactctgattatttccaccgtcgccaccaccacctttctttcc |
83 |
Q |
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| T |
7657695 |
tccaccttgattctgactctgattatttccgccaccaccaccaccacctttctttcc |
7657639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7657757 - 7657725
Alignment:
| Q |
1 |
ttatttccatttttaccctctggcattccacct |
33 |
Q |
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| T |
7657757 |
ttatttccatttttaccctctggcattccacct |
7657725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 48572896 - 48572934
Alignment:
| Q |
64 |
ccaccaccacctttctttcctccattcccatttccacca |
102 |
Q |
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| T |
48572896 |
ccaccaccacctttctttcctccattgccatttccacca |
48572934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 48538558 - 48538612
Alignment:
| Q |
44 |
tctgattatttccaccgtcgccaccaccacctttctttcctccattcccatttcc |
98 |
Q |
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| T |
48538558 |
tctgattatttcctccaccaccaccgccacctttctttcctccattgccatttcc |
48538612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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