View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14033_high_1 (Length: 770)
Name: NF14033_high_1
Description: NF14033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14033_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 493 - 716
Target Start/End: Complemental strand, 53575473 - 53575250
Alignment:
| Q |
493 |
gatttgaaccaccgaaccttgcatattttatgcatgcattgtagcaaccaactgagctaagttcacaaccttattcattatctctatcgccatgatttta |
592 |
Q |
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| T |
53575473 |
gatttgaacccccgaaccttgcatattttatgcatgcattataccaaccaactgaattaagttcacaaccttattcattatctctaccaccatgatttta |
53575374 |
T |
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| Q |
593 |
atctttctcattcaacatcaccatcaataaacacaaattcataaaaatgtctcctttagttttatcttcctctccttcatctttctcttacatttatgat |
692 |
Q |
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| T |
53575373 |
atctttctcattcaacatcaccatcaataaacacaaattcataaaaatgtctcctttagttttatcttcctctccttcatctttctcttacatttatgat |
53575274 |
T |
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| Q |
693 |
ttcatcatcaaattcatgaaaccc |
716 |
Q |
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| T |
53575273 |
ttcatcatcaaattcatgaaaccc |
53575250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 125 - 373
Target Start/End: Complemental strand, 53575830 - 53575591
Alignment:
| Q |
125 |
atcatttctaataaggttaaatgatgtttactctatcatttgagctagttttgatttaactcccgttaaaaattgagattctcgttttgttatttgaaga |
224 |
Q |
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| T |
53575830 |
atcatttctaataaggttaaatgatgtttactctatcatttgagctagttttggtttaactcccgttaaaaattgagattctcgtttttttattttaaga |
53575731 |
T |
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| Q |
225 |
tttgttagttttgaatctcggattcgaagcatctaaatgtgcacttaagtttatataacaagtgacannnnnnnnnataatgtggcatgt----ctagtg |
320 |
Q |
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| T |
53575730 |
tttgttgattttgaatatcggactcggagcatctaaatgtgcacttaagt--------caagtgacattttt-----ttatgtggcatgtctagctagtg |
53575644 |
T |
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| Q |
321 |
gatattattaattcttttagctttattttaattccaagtgtctttttcattat |
373 |
Q |
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| T |
53575643 |
catattattaattattttagctttattttaatcccaagtgtctttttcattat |
53575591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 53579226 - 53579131
Alignment:
| Q |
21 |
tttaattccattgtaattatctatatgtggcttaacgaactaat----agaaaaatatatgtgaaagttatgatatttctaaagagtgtatatata |
112 |
Q |
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| T |
53579226 |
tttaattccattgtaattatctatatgtggcttaacgaactaattaatagaaaaatatatgtgaaagttatgatatttctaaagagtatatatata |
53579131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 594 - 640
Target Start/End: Original strand, 53574459 - 53574505
Alignment:
| Q |
594 |
tctttctcattcaacatcaccatcaataaacacaaattcataaaaat |
640 |
Q |
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| T |
53574459 |
tctttctcattcaacatcatcatcaataaacacaaatgcagaaaaat |
53574505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 53574277 - 53574330
Alignment:
| Q |
320 |
ggatattattaattcttttagctttattttaattccaagtgtctttttcattat |
373 |
Q |
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| T |
53574277 |
ggatattattgattattttagctttattttaattccacttggctttttcattat |
53574330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 28679257 - 28679293
Alignment:
| Q |
320 |
ggatattattaattcttttagctttattttaattcca |
356 |
Q |
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| T |
28679257 |
ggatattattaattcttttagatttattttaattcca |
28679293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 582 - 705
Target Start/End: Original strand, 22837005 - 22837129
Alignment:
| Q |
582 |
ccatgattttaatctttctcattcaacatcaccatcaataaacacaaattc-ataaaaatgtctcctttagttttatcttcctctccttcatctttctct |
680 |
Q |
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| T |
22837005 |
ccatgatcttcatctttctcagtaaacatcatcatcaataaacacaaactctttaaaaatttctcctccagtttcaac-tcatctccttcatctttttct |
22837103 |
T |
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| Q |
681 |
t-acatttatgatttcatcatcaaat |
705 |
Q |
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| T |
22837104 |
tcacatttatgacttcatcatcaaat |
22837129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 25758212 - 25758172
Alignment:
| Q |
316 |
tagtggatattattaattcttttagctttattttaattcca |
356 |
Q |
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| T |
25758212 |
tagtggatattattaattcttttaactttattttaattcca |
25758172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 322 - 372
Target Start/End: Complemental strand, 22053638 - 22053588
Alignment:
| Q |
322 |
atattattaattcttttagctttattttaattccaagtgtctttttcatta |
372 |
Q |
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| T |
22053638 |
atattattaatttttttatctttattttaattccacttgcctttttcatta |
22053588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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