View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14033_high_12 (Length: 234)

Name: NF14033_high_12
Description: NF14033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14033_high_12
NF14033_high_12
[»] chr2 (2 HSPs)
chr2 (19-217)||(36443079-36443273)
chr2 (157-218)||(30393212-30393273)
[»] chr7 (1 HSPs)
chr7 (157-213)||(42597388-42597444)
[»] chr3 (2 HSPs)
chr3 (158-202)||(43492029-43492073)
chr3 (166-218)||(43752190-43752242)
[»] chr1 (2 HSPs)
chr1 (160-217)||(17985736-17985793)
chr1 (157-218)||(30518763-30518824)
[»] chr8 (2 HSPs)
chr8 (158-202)||(11049791-11049835)
chr8 (158-218)||(11539057-11539117)
[»] chr5 (1 HSPs)
chr5 (158-218)||(14791037-14791097)


Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 36443273 - 36443079
Alignment:
Q  19 tcttataaacgaatgtctatcaattgaattatattcataggataaggtatcttaaatcttaacaaggccgttcccgacaatttatagaggttcagttgta 118  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||      ||||||||||    
T  36443273 tcttataaacgaatgtctatcaattgaattatgttcataggataaggtatcttaaatcttaacaaggccgttccagacaattta------ttcagttgta 36443180  T
Q  119 atcttgacaactttttataaaaagaatt--nnnnnnnnntcaacaccacttatagtgataagtaattaggttgtaattaaatatataaacattggttcaa 216  Q
    ||||||||||||||||||||||||||||           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36443179 atcttgacaactttttataaaaagaattaaaaaaaaaaatcaacaccacttataatgataagtaattaggttgtaattaaatatataaacattggttcaa 36443080  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 30393273 - 30393212
Alignment:
Q  157 caacaccacttatagtgataagtaattaggttgtaattaaatatataaacattggttcaaac 218  Q
    |||||| |||||||||||||| ||||||  ||||  |||||||||| | |||||||||||||    
T  30393273 caacactacttatagtgataaataattaatttgtggttaaatatattagcattggttcaaac 30393212  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 42597444 - 42597388
Alignment:
Q  157 caacaccacttatagtgataagtaattaggttgtaattaaatatataaacattggtt 213  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||||| | ||||||||    
T  42597444 caacaccacttatagggataaataattaagttgtaattaaatatattagcattggtt 42597388  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 43492073 - 43492029
Alignment:
Q  158 aacaccacttatagtgataagtaattaggttgtaattaaatatat 202  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||    
T  43492073 aacaccactcatagtgataagtaattaagttgtagttaaatatat 43492029  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 43752242 - 43752190
Alignment:
Q  166 ttatagtgataagtaattaggttgtaattaaatatataaacattggttcaaac 218  Q
    |||||||||||  ||||||  |||||||||||||||| |||| ||||||||||    
T  43752242 ttatagtgatagataattaaattgtaattaaatatatgaacaatggttcaaac 43752190  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 17985793 - 17985736
Alignment:
Q  160 caccacttatagtgataagtaattaggttgtaattaaatatataaacattggttcaaa 217  Q
    ||||||||||||||| || |||||| | |||||| |||||||| | ||||||||||||    
T  17985793 caccacttatagtgaaaaataattaagatgtaatgaaatatatgagcattggttcaaa 17985736  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 30518824 - 30518763
Alignment:
Q  157 caacaccacttatagtgataagtaattaggttgtaattaaatatataaacattggttcaaac 218  Q
    |||||||||||||||| |||| |||||| |||||| |||| ||||| |  ||||||||||||    
T  30518824 caacaccacttatagttataaataattaagttgtagttaattatatgagtattggttcaaac 30518763  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 11049835 - 11049791
Alignment:
Q  158 aacaccacttatagtgataagtaattaggttgtaattaaatatat 202  Q
    |||||||||||||||||||| |||||| ||| || ||||||||||    
T  11049835 aacaccacttatagtgataaataattaagttatagttaaatatat 11049791  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 11539057 - 11539117
Alignment:
Q  158 aacaccacttatagtgataagtaattaggttgtaattaaatatataaacattggttcaaac 218  Q
    |||||| ||||||| ||||| |||||| ||| || |||||||||| | |||||||||||||    
T  11539057 aacacctcttatagcgataaataattaagttatagttaaatatatgagcattggttcaaac 11539117  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 14791097 - 14791037
Alignment:
Q  158 aacaccacttatagtgataagtaattaggttgtaattaaatatataaacattggttcaaac 218  Q
    ||||||| ||| |||||||| | |||| ||| || |||||||||||| |||||||||||||    
T  14791097 aacaccatttaaagtgataaatgattaagttttagttaaatatataagcattggttcaaac 14791037  T

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