View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14033_high_13 (Length: 204)
Name: NF14033_high_13
Description: NF14033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14033_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 36 - 193
Target Start/End: Original strand, 26407483 - 26407640
Alignment:
| Q |
36 |
tgtgagattcacttttcaaatattagatatcaaccacaaattcactcaagcgtccgttatatctttggaatatattcaatagtgtatttgtaagttcaga |
135 |
Q |
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| T |
26407483 |
tgtgagattcacttctcaaatattagatatcaaccacaaattcactccagcctccgttatatctttggaatatattcaatagtgtatttgtaagttcaga |
26407582 |
T |
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| Q |
136 |
ttcacttgtcactaatcaaattgaacttaagagaaacaaaagttcatattcatctcag |
193 |
Q |
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| T |
26407583 |
ttcacttgtcactaatcaaattgaacttaagagaaacaagagttcatattcatctcag |
26407640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 26407369 - 26407464
Alignment:
| Q |
36 |
tgtgagattcacttttcaaatattagatatcaaccacaaattcactcaagcgtccgttatatctttggaatatattcaatagtgtatttgtaagtt |
131 |
Q |
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| T |
26407369 |
tgtgagattcacttctcaaatattagatatcaaccacaaattcactcaagcctccgttatatcttttgaatatattcaatagtgtatttggaagtt |
26407464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 11434062 - 11434178
Alignment:
| Q |
71 |
acaaattcactcaagcgtccgttatatctttggaatatattcaatagtgtatttg-taagttcagattcacttgtcactaatcaaattgaacttaagaga |
169 |
Q |
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| T |
11434062 |
acaaatacacacaagcctccattgtatctttggaatatattttatagtgtatttgaaaagttcaaattcacttgtgtgtgatcagattgaactt-atata |
11434160 |
T |
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| Q |
170 |
aacaaaagttcatattca |
187 |
Q |
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| T |
11434161 |
aacaaaagttcagattca |
11434178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 7170211 - 7170137
Alignment:
| Q |
51 |
tcaaatattagatatcaaccacaaattcactcaagcgtccgttatatctttggaatatattcaatagtgtatttg |
125 |
Q |
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||||| ||||||| ||| ||||||| ||||||||| ||| |||||||| ||||| || ||| |||||||||||| |
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| T |
7170211 |
tcaaacattagattgcaagcacaaatacactcaagcctccattatatctctggaacatcttctatagtgtatttg |
7170137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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